An algorithm of multiple sequence alignment based on consensus sequence searched by simulated annealing and star alignment

机译：基于模拟退火和星形比对的共有序列搜索的多序列比对算法

获取原文

获取原文并翻译 | 示例

页面导航

摘要
著录项
相似文献
相关主题

摘要

Sequence alignment is an important method of sequence analysis in biological informatics, by which the characteristics of a gene family can be conveniently determined through consensus sequence. Finding a consensus sequence prior to multiple sequence alignment makes the sequence alignment easier. Thus, the consensus sequence should be produced by simulated annealing and star alignment algorithms. Furthermore, the star alignment can be used to compare each sequence in the consensus sequence.

机译：序列比对是生物学信息学中重要的序列分析方法，通过该序列可以方便地通过共有序列确定基因家族的特征。在多个序列比对之前找到共有序列使得序列比对更加容易。因此，应通过模拟退火和星形比对算法产生共有序列。此外，星形比对可用于比较共有序列中的每个序列。

著录项

来源
《4th International Symposium on Bioelectronics and Bioinformatics》|2015年|3-6|共4页
会议地点 Beijing(CN)
作者
Yao Dengfeng; Jiang Minghu; You Xu; Abulizi Abudoukelimu; Hou Renkui;
展开▼
作者单位

Beijing Key Laboratory of Information Service Engineering, Beijing Union University, Beijing 100101, China;

展开▼
会议组织
原文格式 PDF
正文语种 eng
中图分类
关键词
consensus sequence; multiple sequence alignment; simulated annealing; star alignment;

机译：共有序列;多序列比对;模拟退火;星形比对;

相似文献

外文文献
中文文献
专利

1. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework [J] . Su Wenhe, Liao Xiangke, Lu Yutong, Journal of computational biology: A journal of computational molecular cell biology . 2017,第12期

机译：基于后缀树和中心星策略的多个序列对齐：一种用于火花并联框架上多个核苷酸序列对准的线性方法
2. Enhanced A algorithms for multiple alignments: optimal alignments for several sequences and k-opt approximate alignments for large cases [J] . Takahiro Ikeda, Hiroshi Imai Theoretical computer science . 1999,第2期

机译：用于多个比对的增强型A算法：多个序列的最佳比对，大情况下的k-opt近似比对
3. MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments [J] . Peter W Collingridge, Steven Kelly BMC Bioinformatics . 2012,第1期

机译：MergeAlign：通过动态重建协商的多个序列对齐来提高多个序列对齐性能
4. An algorithm of multiple sequence alignment based on consensus sequence searched by simulated annealing and star alignment [C] . Yao Dengfeng, Jiang Minghu, You Xu, International Symposium on Bioelectronics and Bioinformatics . 2015

机译：基于模拟退火和星对齐搜索的多个序列对齐的算法
5. Measuring deviation from a deeply conserved consensus in protein multiple sequence alignments [D] . Mokin, Sergey. 2008

机译：测量与蛋白质多个序列比对中的深度保守共识的偏差
6. MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments [O] . Peter W Collingridge, Steven Kelly 2012

机译：MergeAlign：通过动态重建共有多个序列比对来改善多个序列比对的性能
7. A New Simulated Annealing Algorithm for the Multiple Sequence Alignment Problem: The approach of Polymers in a Random Media [O] . Hernández-Guía, M., Mulet, R., Rodríguez-Pérez, S. 2005

机译：一种新的多序列比对模拟退火算法问题：聚合物在随机介质中的应用

An algorithm of multiple sequence alignment based on consensus sequence searched by simulated annealing and star alignment

摘要

著录项

相似文献

相关主题

期刊订阅