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Evaluation of Unique Sequences on the European Data Grid

机译:在欧洲数据网格上评估唯一序列

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摘要

Thanks to the development of genetic engineering, various kinds of genomic information are being unveiled. Hence, now, it becomes feasible to study in molecular biology by analyzing the entire genomic information. On the other hand, the quantity of the genomic information stocked in database is increasing day after day. In order to process the whole information, we have to develop an effective method to deal with lots of data. It is indispensable not only to make an effective and rapid algorithm but also to use high-speed computer resource so as to analyze the biological information. For this purpose, as one of the most promised computing environments, the grid computing architecture has appeared recently. The European Data Grid (EDG) is one of the grid computing environments (Segal 2000). In this paper, at first, we propose an effective sequence analysis method to find out and evaluate unique sequences for primer design by extending the previously proposed method (Kurata 2002). Next, we describe how to implement this method upon the European Data Grid.
机译:由于基因工程的发展,各种基因组信息正在被揭示。因此,现在,通过分析整个基因组信息来进行分子生物学研究变得可行。另一方面,数据库中存储的基因组信息的数量每天都在增加。为了处理整个信息,我们必须开发一种有效的方法来处理大量数据。不仅要制定有效而快速的算法,而且要利用高速计算机资源来分析生物信息也是必不可少的。为此,作为最有希望的计算环境之一,网格计算体系结构最近已经出现。欧洲数据网格(EDG)是网格计算环境之一(Segal 2000)。在本文中,首先,我们提出了一种有效的序列分析方法,可以通过扩展先前提出的方法来寻找和评估独特的引物设计序列(Kurata 2002)。接下来,我们描述如何在欧洲数据网格上实现此方法。

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