An automatic gene ontology software tool for bicluster and cluster comparisons

机译：用于双聚类和聚类比较的自动基因本体软件工具

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摘要

We propose an Automatic Gene Ontology (AGO) software as a flexible, open-source Matlab software tool that allows the user to easily compare the results of the bicluster and cluster methods. This software provides several methods to differentiate and compare the results of candidate algorithms. The results reveal that bicluster/cluster algorithms could be considered as integrated modules to recover the interesting patterns in the microarray datasets. The further application of AGO could to solve the dimensionality reduction of the gene regulatory networks.

机译：我们建议使用自动基因本体论（AGO）软件作为一种灵活的开源Matlab软件工具，该工具使用户可以轻松地比较二聚体法和聚类法的结果。该软件提供了几种方法来区分和比较候选算法的结果。结果表明，bicluster / cluster算法可以被视为集成模块，以恢复微阵列数据集中有趣的模式。 AGO的进一步应用可以解决基因调控网络的降维问题。

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来源
《Computational Intelligence in Bioinformatics and Computational Biology, 2009. CIBCB '09》|2009年|163-167|共5页
会议地点 Nashville TN(US);Nashville TN(US)
作者
Al-Akwaa F.M.; Kadah Y.M.;
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Univ. of Sci. Technol., Sana'a;

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biology computing; cellular biophysics; genetics; mathematics computing; ontologies (artificial intelligence); public domain software; software tools; automatic gene ontology software; bicluster method; cluster method; gene regulatory networks; microarray datasets; open-source Matlab software tool;

机译：生物计算;细胞生物物理学;遗传学;数学计算;本体论（人工智能）;公共领域软件;软件工具;自动基因本体论软件;双聚类方法;聚类方法;基因调控网络;微阵列数据集;开源Matlab软件工具;

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专利

1. A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data [J] . Li Li, Yang Guo, Wenwu Wu, BioData Mining . 2012,第1期

机译：通过量化基因表达数据的双峰优度对五种双峰算法进行比较和评估
2. Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks [J] . Nikolai Daraselia, Anton Yuryev, Sergei Egorov, BMC Bioinformatics . 2007,第1期

机译：基因本体注释的自动提取及其与蛋白质网络中簇的相关性
3. Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks [J] . Nikolai Daraselia, Anton Yuryev, Sergei Egorov, BMC Bioinformatics . 2007,第1期

机译：基因本体注释的自动提取及其与蛋白质网络中簇的相关性
4. An Automatic Gene Ontology Software Tool for Bicluster and Cluster Comparisons [C] . Fadhl M. Al-Akwaa, Yasser. M. Kadah IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology . 2009

机译：用于BICLUSTER和集群比较的自动基因本体软件工具
5. A comparative study on ontology generation and text clustering using VSM, LSI, and document ontology models. [D] . Taylor, William P., II. 2007

机译：使用VSM，LSI和文档本体模型进行本体生成和文本聚类的比较研究。
6. A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data [O] . Li Li, Yang Guo, Wenwu Wu, 2012

机译：通过定量基因表达数据的双峰优度对五种双峰算法进行比较和评估
7. Comparison of natural language processing tools for automatic gene ontology annotation of scientific literature [O] . Lucas Beasley, Prashanti Manda 2018

机译：自然语言处理工具对科学文学的自动基因本体学诠释
8. Automatic Test Data Generation Tool for Large- Scale Software Systems [R] . Kolawa, A., Strickland, B., Hicken, A. 1994

机译：用于大规模软件系统的自动测试数据生成工具

An automatic gene ontology software tool for bicluster and cluster comparisons

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