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首页> 外文会议>Conference on Manipulation and Analysis of Biomolecules, Cells, and Tissues Jan 28-29, 2003 San Jose, California, USA >CytometryML, a markup language for analytical cytology
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CytometryML, a markup language for analytical cytology

机译：CytometryML，一种用于分析细胞学的标记语言

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Cytometry Markup Language, CytometryML, is a proposed new analytical cytology data standard. CytometryML is a set of XML schemas for encoding both flow cytometry and digital microscopy text based data types. CytometryML schemas reference both DICOM (Digital Imaging and Communications in Medicine) codes and FCS keywords. These schemas provide representations for the keywords in FCS 3.0 and will soon include DICOM microscopic image data. Flow Cytometry Standard (FCS) list-mode has been mapped to the DICOM Waveform Information Object. A preliminary version of a list mode binary data type, which does not presently exist in DICOM, has been designed. This binary type is required to enhance the storage and transmission of flow cytometry and digital microscopy data. Index files based on Waveform indices will be used to rapidly locate the cells present in individual subsets. DICOM has the advantage of employing standard file types, TIF and JPEG, for Digital Microscopy. Using an XML schema based representation means that standard commercial software packages such as Excel and Math-Cad can be used to analyze, display, and store analytical cytometry data. Furthermore, by providing one standard for both DICOM data and analytical cytology data, it eliminates the need to create and maintain special purpose interfaces for analytical cytology data thereby integrating the data into the larger DICOM and other clinical communities. A draft version of CytometryML is available at www.newportinstruments.com.
机译：细胞计数标记语言CytometryML是一种提出的新的分析细胞学数据标准。 CytometryML是一组XML模式，用于对流式细胞术和基于数字显微镜文本的数据类型进行编码。 CytometryML模式同时引用了DICOM（医学数字成像和通信）代码和FCS关键字。这些架构提供了FCS 3.0中关键字的表示形式，并将很快包含DICOM显微图像数据。流式细胞术标准（FCS）列表模式已映射到DICOM波形信息对象。已经设计了DICOM中目前不存在的列表模式二进制数据类型的初步版本。需要这种二进制类型来增强流式细胞仪和数字显微镜数据的存储和传输。基于波形索引的索引文件将用于快速定位各个子集中存在的单元。 DICOM具有将标准文件类型TIF和JPEG用于数字显微镜的优势。使用基于XML模式的表示法意味着可以使用标准的商业软件包（例如Excel和Math-Cad）来分析，显示和存储细胞分析数据。此外，通过为DICOM数据和分析性细胞学数据提供一种标准，它消除了创建和维护用于分析性细胞学数据的专用接口的需求，从而将数据整合到更大的DICOM和其他临床社区中。可在www.newportinstruments.com上获取CytometryML的草稿版本。

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