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Integrating text mining into distributed bioinformatics workflows: a Web services implementation

机译:将文本挖掘集成到分布式生物信息学工作流中:Web服务实现

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Workflows are useful ways to support scientific researchers in carrying out repetitive analytical tasks on digital information. Web services can provide a useful implementation mechanism for workflows, particularly when they are distributed, i.e., where some of the data or processing resources are remote from the scientist initiating the workflow. While many scientific workflows primarily involve operations on structured or numerical data, all interpretation of results is done in the context of related work in the field, as reflected in the scientific literature. Text mining technology can assist in automatically building helpful pathways into the relevant literature as part of a workflow in order to support the scientific discovery process. We demonstrate how these three technologies - workflows, text mining, and Web services - can be fruitfully combined in order to support bioinformatics researchers investigating the genetic basis of two physiological disorders - Graves' disease and Williams syndrome.
机译:工作流是支持科研人员对数字信息执行重复分析任务的有用方法。 Web服务可以为工作流提供有用的实现机制,尤其是在将它们分发时,即某些数据或处理资源远离启动工作流的科学家的情况下。尽管许多科学工作流程主要涉及对结构化数据或数字数据的操作,但是对结果的所有解释都是在相关领域的相关工作中进行的,正如科学文献所反映的那样。文本挖掘技术可以协助自动将有用的途径构建到相关文献中,作为工作流程的一部分,以支持科学发现过程。我们演示了如何将这三种技术(工作流,文本挖掘和Web服务)有效地结合起来,以支持生物信息学研究人员研究两种生理疾病-Graves病和Williams综合征的遗传基础。

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