Phylogenetic networks based on the molecular clock hypothesis

机译：基于分子钟假说的系统发生网络

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A classical result in phylogenetic trees is that a binary phylogenetic tree adhering to the molecular clock hypothesis exists if and only if the matrix of distances between taxa is ultrametric. The ultrametric condition is very restrictive. In this paper we study phylogenetic networks that can be constructed assuming the molecular clock hypothesis. We characterize distance matrices that admit such networks for 3 and 4 taxa. We design an efficient algorithm for a special class of phylogenetic networks that can detect the existence of a network and constructs it.

机译：系统发育树的一个经典结果是，当且仅当分类群之间的距离矩阵是超度量的时，才存在遵守分子时钟假设的二元系统发育树。超测条件是非常严格的。在本文中，我们研究了可以在假设分子时钟假设的情况下构建的系统发育网络。我们表征了允许此类网络用于3和4类群的距离矩阵。我们为一类特殊的系统发育网络设计了一种有效的算法，该算法可以检测网络的存在并进行构建。

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《》|2005年|P.320-323|共4页
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Bereg; S.; Zhang; Y.;
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中图分类工业技术;
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biology computing; evolution (biological); genetics; molecular biophysics; molecular clock hypothesis; phylogenetic networks; phylogenetic trees; ultrametric condition;

机译：生物学计算;进化（生物学）;遗传学;分子生物物理学;分子时钟假设;系统进化网络;系统进化树;超测条件;

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1. Phylogenetic Networks Based on the Molecular Clock Hypothesis [J] . Bereg Sergey, Zhang Yuanyi IEEE/ACM transactions on computational biology and bioinformatics . 2007,第4期

机译：基于分子钟假说的系统进化网络
2. Molecular phylogenetics and molecular clock dating of Sapindales based on plastid rbcL, atpB and trnL-trnF DNA sequences [J] . Muellner-Riehl Alexandra N., Weeks Andrea, Clayton Joshua W., Taxon . 2016,第5期

机译：基于质体rbcL，atpB和trnL-trnF DNA序列的Sapindales分子系统发育和分子钟定年
3. Molecular and phylogenetic analyses reveal mammalian-like clockwork in the honey bee (Apis mellifera) and shed new light on the molecular evolution of the circadian clock. [J] . Rubin EB, Shemesh Y, Cohen M, Genome research . 2006,第11期

机译：分子和系统发育分析揭示了蜜蜂（Apis mellifera）中类似哺乳动物的发条，并为昼夜节律的分子进化提供了新的思路。
4. Phylogenetic networks based on the molecular clock hypothesis [C] . Bereg S., Zhang Y. Institute of Electrical and Electronics Engineers Symposium on Bioinformatics and Bioengineering . 2005

机译：基于分子钟假设的系统发育网络
5. Characterization of c-GMP dependent kinases within the circadian molecular clockworks: Structural, phylogenetic, and functional analyses. [D] . Pace, Laura A. 2007

机译：昼夜节律性分子钟表中依赖c-GMP的激酶的特征：结构，系统发育和功能分析。
6. Molecular and phylogenetic analyses reveal mammalian-like clockwork in the honey bee (Apis mellifera) and shed new light on the molecular evolution of the circadian clock [O] . Elad B. Rubin, Yair Shemesh, Mira Cohen, 2006

机译：分子和系统发育分析揭示了蜜蜂（Apis mellifera）中类似哺乳动物的发条并为生物钟的分子进化提供了新的思路
7. A Multi-model Kalman Filter Clock Synchronization Algorithm based on Hypothesis Testing in Wireless Sensor Networks [O] . Xiali Li, Shaona Yu, Yuan Lin, 2012

机译：基于无线传感器网络假设检测的多模型卡尔曼滤清时钟同步算法

Phylogenetic networks based on the molecular clock hypothesis

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