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Building and provisioning bioinformatics environments on public and private Clouds

机译:在公共云和私有云上构建和配置生物信息环境

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Unlike newly developed Web applications that can be designed from the ground up to utilize cloud APIs and run natively within cloud infrastructure, most complex bioinformatics pipelines that are in advanced states of development can only be encapsulated within VMs along with all their software and data dependencies. To take advantage of the scalability offered by the cloud, additional frameworks are required to create virtualized compute clusters and emulate the most common infrastructure found on institutional resources where most of the existing bioinformatics pipelines are generally run. In this paper we describe one such framework, its compatibility with multiple Clouds and present an automated process for deploying the entire system so it can be made easily available on any Cloud.
机译:与可以完全从头开始设计以利用云API并在云基础架构中本地运行的新开发的Web应用程序不同,处于高级开发状态的大多数复杂生物信息学管道只能封装在VM及其所有软件和数据依赖性中。为了利用云提供的可伸缩性,需要额外的框架来创建虚拟化的计算集群,并模拟通常运行大多数现有生物信息学管道的机构资源上发现的最常见的基础架构。在本文中,我们描述了一个这样的框架及其与多个云的兼容性,并提出了一个用于部署整个系统的自动化流程,因此可以轻松地在任何云上使用它。

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