Nucleosome positioning prediction in C. elegans based on increment of diversity combined with quadratic discriminant analysis

机译：基于多样性增量和二次判别分析的秀丽隐杆线虫核小体定位预测

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Based on increment of diversity combined with quadratic discriminant analysis (IDQD), a novel model was developed to distinguish core DNA and linker DNA sequence in C. elegans genome using only k-mer frequency information of sequences in this work. The model achieved a good performance with a high average accuracy and correlation coefficient of 74.85% and 0.498, and the area under the Receiver Operator Characteristics curve (auROC) of our classifier was about 0.829 for C. elegans.

机译：基于多样性的增量与二次判别分析（IDQD）相结合，开发了一种新型模型，以利用这项工作中仅使用序列的k-mer频率信息来区分C.egars基因组中的核心DNA和接头DNA序列。该模型实现了良好的性能，具有74.85％和0.498的高平均精度和相关系数，并且我们分类器的接收器操作员特性曲线（AUROC）下的区域为C.杆杆线的约0.829。

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《2010 3rd International Conference on Advanced Computer Theory and Engineering》|2010年|p.V1-266-V1-268|共3页
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Xiujuan Zhao; Zhiyong Pei; Jia Liu; Songye Ren; Lu Cai;
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正文语种
中图分类理论、方法;
关键词
Increment of Diversity; Nucleosome Positioning; Quadratic Discriminant Analysis;

机译：多样性增加;核小体定位;二次判别分析;

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专利

1. Prediction of nucleosome DNA formation potential and nucleosome positioning using increment of diversity combined with quadratic discriminant analysis. [J] . Zhao X, Pei Z, Liu J, Chromosome research: An international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology . 2010,第7期

机译：使用多样性的增加结合二次判别分析预测核小体DNA的形成潜力和核小体的定位。
2. Prediction of nucleosome DNA formation potential and nucleosome positioning using increment of diversity combined with quadratic discriminant analysis [J] . Xiujuan Zhao, Zhiyong Pei, Jia Liu, Chromosome Research . 2010,第7期

机译：使用多样性增量结合二次判别分析预测核小体DNA的形成潜力和核小体的定位
3. Predicting Antimicrobial Peptides by Using Increment of Diversity with Quadratic Discriminant Analysis Method [J] . Pengmian Feng, Zhenyi Wang, Xiaoyu Yu IEEE/ACM transactions on computational biology and bioinformatics . 2019,第4期

机译：二次判别分析法利用多样性的增量预测抗菌肽
4. Nucleosome positioning prediction in C. elegans based on increment of diversity combined with quadratic discriminant analysis [C] . Xiujuan Zhao, Zhiyong Pei, Jia Liu, International Conference on Advanced Computer Theory and Engineering . 2010

机译：基于二次判别分析的多样性增量C.埃贝朗斯的核心定位预测
5. Nucleosome dynamics and organization in C. elegans gametes and embryos [D] . Jeffers, Tess Elizabeth 2016

机译：秀丽隐杆线虫配子和胚胎中的核小体动力学和组织。
6. Splice site prediction with quadratic discriminant analysis using diversity measure [O] . Lirong Zhang, Liaofu Luo 2003

机译：利用多样性判别法进行二次判别分析的熔接位点预测
7. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning [O] . Valouev, Anton, Ichikawa, Jeffrey, Tonthat, Thaisan, 2008

机译：秀丽隐杆线虫的高分辨率核小体位置图显示缺乏通用的序列决定的定位

Nucleosome positioning prediction in C. elegans based on increment of diversity combined with quadratic discriminant analysis

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