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Segmentation of follicles from CD8-stained slides of follicular lymphoma using deep learning

机译:使用深度学习对CD8染色的滤泡性淋巴瘤切片进行滤泡细分

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Follicular Lymphoma (FL) is the second most common subtype of lymphoma in the Western World. It is alow-grade lymphoma arising from Germinal Centre (GC) B cells. The neoplasm predominantly consists ofback-to-back arrangement of nodules or follicles of transformed GC B cells with the replacement of lymphnode architecture and loss of normal cortex and medullary differentiation, which is preserved in nonneoplasticor reactive lymph node. There is a growing interest in studying different cell subsets inside andon the periphery of the follicles to direct curative therapies and minimize treatment-related complications.To facilitate this analysis, we develop an automated method for follicle detection from images of CD8stained histopathological slides. The proposed method is trained on eight whole digital slides. The methodis inspired by U-net to segment follicles from the whole slide images. The results on an independent datasetresulted in an average Dice similarity coefficient of 85.6% when compared to an expert pathologist’sannotations. We expect that the method will play a considerable role for comparing the ratios of differentsubsets of cells inside and at the periphery of the follicles.
机译:滤泡性淋巴瘤(FL)是西方世界第二大最常见的淋巴瘤亚型。它是一个 源于生殖中心(GC)B细胞的低度淋巴瘤。肿瘤主要由 转化的GC B细胞结节或滤泡的背靠背排列,淋巴液置换 非肿瘤中保留的结节结构以及正常皮质和髓样分化的丧失 或反应性淋巴结。对研究细胞内部和细胞内部不同细胞亚群的兴趣与日俱增 在卵泡的周围进行直接治疗,并最大程度地减少与治疗相关的并发症。 为了促进此分析,我们开发了一种自动方法,用于从CD8图像中检测卵泡 染色的组织病理切片。所提出的方法在八个完整的数字幻灯片上进行了训练。方法 受U-net启发,从整个幻灯片图像中分割出毛囊。独立数据集上的结果 相较于专家病理学家的平均Dice相似系数为85.6% 注释。我们希望该方法将在比较不同比率之间起很大作用。 卵泡内部和周围的细胞亚群。

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