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Generalization of tumor identification algorithms

机译:肿瘤识别算法的推广

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The morphological features that pathologists use to differentiate neoplasms from normal tissue are nonspecificto tissue type. For example, if given a Ki67 stained biopsy of neuroendocrine or breast tumor, apathologist would be able to correctly identify morphologically abnormal cells in both samples but maystruggle to identify the origin of both samples. This is also true for other pathological malignancies such ascarcinomas, sarcomas, and leukemia. This implies that computer algorithms trained to recognize tumorfrom one site should be able to identify tumor from other sites with similar tumor subtypes. Here, we presentthe results of an experiment that supports this hypothesis. We train a deep learning system to distinguishtumor from non-tumor regions in Ki67 stained neuroendocrine tumor digital slides. Then, we test the same,unmodified, deep learning model to distinguish breast cancer from non-cancer regions. When applied to asample of 96 high power fields, our system achieved a cumulative pixel-wise accuracy of 86% across thesehigh-power fields. To our knowledge, our results are the first to formally demonstrate generalizedsegmentation of tumors from different sites of origin through image analysis. This paradigm has thepotential to help with the design of tumor identification algorithms as well as the composition of the datasetsthey draw from.
机译:病理学家用来区分肿瘤与正常组织的形态学特征是非特异性的 组织类型。例如,如果对神经内分泌或乳腺肿瘤进行Ki67染色活检, 病理学家将能够正确识别两个样品中形态异常的细胞,但可能 努力确定两个样本的来源。其他病理性恶性肿瘤也是如此,例如 癌,肉瘤和白血病。这意味着经过训练可以识别肿瘤的计算机算法 来自一个部位的肿瘤应该能够从具有相似肿瘤亚型的其他部位鉴别出肿瘤。在这里,我们介绍 支持该假设的实验结果。我们训练深度学习系统来区分 Ki67染色的神经内分泌肿瘤数字幻灯片中来自非肿瘤区域的肿瘤。然后,我们测试相同 未经修改的深度学习模型,可将乳腺癌与非癌症地区区分开来。当应用于 在96个高功率场的样本中,我们的系统在这些点上的累积像素精度达到了86% 大功率领域。据我们所知,我们的结果是第一个正式证明广义的 通过图像分析对来自不同起源部位的肿瘤进行分割。这种范式具有 可能有助于设计肿瘤识别算法以及数据集的组成 他们从中吸取。

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