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Coalescent theory and demographic inference in a continuous population and extensions of the kinship theory of imprinting.

机译:连续人口中的合并理论和人口统计学推论和印迹理论的延伸。

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摘要

This thesis is composed of two parts. Part one develops a theory that allows demographic parameters to be estimated from a population with geographic structure, but without subdivision into discrete demes. The analysis focuses on the case of a finite, one-dimensional habitat in which gene flow is limited. That is, there is a correlation between the locations of parents and offspring, which generates a correlation between geographic proximity and genetic similarity. An analytic solution is derived for the joint probability distribution of the times and locations of the most recent common ancestor of a pair of homologous DNA sequences evolving neutrally in such a one-dimensional habitat. Demographic parameters are estimated using composite likelihood maximization. Consideration is given to how the method could be extended to permit demographic inference from populations with more complex geographic structures.; Part two includes three theoretical analyses of genomic imprinting, the phenomenon whereby an allele's pattern of expression depends on its parental origin. The kinship theory explains imprinting as the outcome of a conflict arising when the effects of increasing expression at a locus have different effects on matrilineal and patrilineal inclusive fitness. The best-studied imprinted genes are expressed in fetal tissues of placental mammals and affect fetal growth via the distribution of maternal resources among offspring. The first of the three analyses models the coevolution of two oppositely imprinted loci with antagonistic effects on fetal growth. This analysis makes specific predictions both about the patterns of imprinting allowable under the kinship theory and about the historical progression of evolutionary events at the two loci. The second analysis presents a model for understanding the evolution of imprinting at loci that are expressed in the brains of adult mice and affect the quality of maternal care provided to their offspring. The third analysis proposes and explanation of an observed asymmetry in the mechanisms of silencing at maternally silenced and paternally silenced loci. The model also suggests a novel explanation for the loss of imprinting at particular loci, and makes specific predictions that will permit this hypothesis to be tested.
机译:本文由两部分组成。第一部分开发了一种理论,该理论允许从具有地理结构但不细分为离散特征的人口中估算人口统计参数。分析的重点是有限的一维生境,其中基因流受到限制。也就是说,父母和后代的位置之间存在相关性,这在地理邻近性和遗传相似性之间产生了相关性。推导了在这样的一维生境中中性进化的一对同源DNA序列的最新共同祖先的时间和位置的联合概率分布的解析解。使用复合似然最大化估计人口统计参数。考虑如何扩展该方法以允许从具有更复杂地理结构的人口中进行人口统计学推断。第二部分包括对基因组印迹的三个理论分析,即等位基因表达方式取决于其亲本起源的现象。亲属关系理论将印记解释为冲突的结果,当一个位置表达的增加对母系和父系的包容性适应性产生不同的影响时,就会产生冲突。研究最深入的印迹基因在胎盘哺乳动物的胎儿组织中表达,并通过母体资源在后代中的分布影响胎儿的生长。这三个分析中的第一个分析模型模拟了两个相对印迹的基因座的协同进化,对胎儿的生长具有拮抗作用。该分析对亲缘关系理论下允许的印迹模式以及两个基因座上进化事件的历史进程做出了特定的预测。第二个分析提供了一个模型,用于理解在成年小鼠的大脑中表达的基因座上的印迹变化,并影响提供给其后代的母体保健质量。第三次分析提出并解释了在母亲沉默和父亲沉默基因座沉默机制中观察到的不对称性。该模型还为特定位点的印迹丢失提出了新颖的解释,并做出了具体的预测将允许检验该假设。

著录项

  • 作者

    Wilkins, Jon Foote.;

  • 作者单位

    Harvard University.;

  • 授予单位 Harvard University.;
  • 学科 Biology Genetics.; Biophysics General.
  • 学位 Ph.D.
  • 年度 2002
  • 页码 190 p.
  • 总页数 190
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 遗传学;生物物理学;
  • 关键词

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