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Probing interactions in OmpF Porin solutions via light scattering.

机译:通过光散射探测OmpF孔溶液中的相互作用。

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Knowledge of protein structure and function is critical for understanding basic living cell function and interaction with its native environment. Protein structures are typically determined using X-ray crystallography, which is the only method that can locate the position of each amino acid residue and its constituent atoms in three-dimensional space for structures greater than 30 kDa. X-ray crystallography does, however, have an absolute prerequisite of large, high quality protein crystals.; To date, crystallization of macromolecular biological molecules has been most successful with soluble proteins. Membrane proteins have lagged significantly behind soluble proteins in terms of the number of structures determined and in terms of understanding the crystallization process. This is due to the amphiphilic nature of membrane proteins, which require detergents for solubilization and purification. These detergent molecules combine with protein molecules to form protein-detergent complexes.; This research attempts to develop a systematic method of crystallizing membrane proteins. The research supports prior suggestions that suggest that attractive interactions among the detergent portions of protein detergent complexes play a significant to dominant role in crystallization. This dissertation focuses on determining the role that detergent molecules play in crystallization of the membrane protein OmpF Porin. Attractive interactions among the detergent portions of protein detergent complexes that are optimal for crystallization were identified utilizing static light scattering measurements of the second osmotic virial coefficient (B22). The B22 behavior of protein-free micelles proved very similar to that of protein-detergent complexes suggesting that the detergent's contribution dominates the behavior of protein detergent complexes under crystallizing conditions. B22 values for protein detergent complexes, as well as protein free micelles, were found to lie in Wilson's “Crystallization slot” under solution conditions conducive to crystallization. Attractive interactions between micelles increase as solution conditions approach the cloud point. The micelle size and molar mass were found to be constant as solution conditions were varied approaching the cloud point. Such information allows for the identification of which subset(s) of all possible crystallization conditions generate interaction potentials favorable for crystallization.
机译:蛋白质结构和功能的知识对于理解基本的活细胞功能及其与其天然环境的相互作用至关重要。通常使用X射线晶体学确定蛋白质结构,这是唯一一种可以在大于30 kDa的结构的三维空间中定位每个氨基酸残基及其组成原子的位置的方法。但是,X射线晶体学确实具有大型,高质量蛋白质晶体的绝对先决条件。迄今为止,大分子生物分子的结晶在可溶性蛋白质方面最为成功。就确定的结构数量和对结晶过程的理解而言,膜蛋白远远落后于可溶性蛋白。这是由于膜蛋白具有两亲性,需要清洁剂才能溶解和纯化。这些去污剂分子与蛋白质分子结合形成蛋白质洗涤剂复合物。这项研究试图开发一种结晶膜蛋白的系统方法。该研究支持先前的建议,这些建议表明蛋白质洗涤剂复合物的洗涤剂部分之间的有吸引力的相互作用在结晶中起着重要的至显性的作用。本文主要研究确定去污剂分子在膜蛋白OmpF Porin结晶中的作用。利用第二渗透性病毒系数(B 22 )的静态光散射测量,可以确定最适合结晶的蛋白质去污剂复合物去污剂部分之间的吸引力相互作用。无蛋白胶束的B 22 行为被证明与蛋白洗涤剂复合物的行为非常相似,这表明在结晶条件下,去污剂的贡献主导了蛋白去污剂复合物的行为。发现蛋白质去垢剂复合物以及不含蛋白质的胶束的B 22 值位于有助于结晶的溶液条件下,位于Wilson的“结晶槽”中。随着溶液条件接近浊点,胶束之间的吸引力相互作用增加。发现当溶液条件变化接近浊点时,胶束大小和摩尔质量是恒定的。这样的信息允许识别所有可能的结晶条件的哪些子集产生有利于结晶的相互作用电势。

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