A loop modeling method, adaptive simulated annealing, for ab initio prediction of protein loop structures, as an optimization problem of searching the global minimum of a given energy function, is proposed. An interface-friendly toolbox—LoopModeller in Windows and Linux systems, VC++ and OpenGL environments is developed for analysis and visualization. Simulation results of three short-chain neurotoxins modeled by LoopModeller show that the method proposed is fast and efficient.
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机译：Data mining of Arabidopsis thaliana salt-response proteins based on bioinformatics analysis Guo Meili, Gao Weixi, Yu Xuejuan, Zhou Chunxi, Liu Fujun, Liu Xin Abstract
