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Unsupervised Domain Adaptation for Classification of Histopathology Whole-Slide Images

机译:用于组织病理学全幻灯片图像分类的无监督域适应

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摘要

Computational image analysis is one means for evaluating digitized histopathology specimens that can increase the reproducibility and reliability with which cancer diagnoses are rendered while simultaneously providing insight as to the underlying mechanisms of disease onset and progression. A major challenge that is confronted when analyzing samples that have been prepared at disparate laboratories and institutions is that the algorithms used to assess the digitized specimens often exhibit heterogeneous staining characteristics because of slight differences in incubation times and the protocols used to prepare the samples. Unfortunately, such variations can render a prediction model learned from one batch of specimens ineffective for characterizing an ensemble originating from another site. In this work, we propose to adopt unsupervised domain adaptation to effectively transfer the discriminative knowledge obtained from any given source domain to the target domain without requiring any additional labeling or annotation of images at the target site. In this paper, our team investigates the use of two approaches for performing the adaptation: (1) color normalization and (2) adversarial training. The adversarial training strategy is implemented through the use of convolutional neural networks to find an invariant feature space and Siamese architecture within the target domain to add a regularization that is appropriate for the entire set of whole-slide images. The adversarial adaptation results in significant classification improvement compared with the baseline models under a wide range of experimental settings.
机译:计算图像分析是评估数字化组织病理学标本的一种方法,可以提高癌症诊断的可重复性和可靠性,同时可以洞悉疾病发作和进展的潜在机制。分析在不同实验室和机构制备的样品时面临的主要挑战是,由于孵育时间和制备样品的方法略有不同,用于评估数字化样品的算法通常表现出异质染色特性。不幸的是,这样的变化会使得从一批样本中学习到的预测模型无法有效地表征源自另一个站点的整体。在这项工作中,我们建议采用无监督域自适应,以有效地将从任何给定源域获得的判别性知识转移到目标域,而无需在目标站点上对图像进行任何其他标记或注释。在本文中,我们的团队调查了两种用于执行自适应的方法:(1)颜色标准化和(2)对抗训练。对抗训练策略是通过使用卷积神经网络在目标域内找到不变特征空间和暹罗架构来实现的,以添加适合于整个整张幻灯片图像的正则化。与基准模型相比,在广泛的实验设置下,对抗性适应导致明显的分类改进。

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