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首页> 美国卫生研究院文献>Data in Brief >Determination of GC content of Thermotoga maritima Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification
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Determination of GC content of Thermotoga maritima Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification

机译：确定滨海嗜热菌嗜热嗜热菌和嗜热嗜热菌菌株的GC含量：用于更高层次分类的GC数据集

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A total of 16 strains of hyperthermophilic Thermotoga complete genome sequences viz. Thermotoga maritima (, , , , , , , , , , & ), Thermotoga neapolitana (, & ) and Thermotoga thermarum ( & ) complete genome sequences were retrieved from NCBI BioSample database. ENDMEMO GC used for creation of data on GC content in Thermotoga sp. DNA sequences. Maximum GC content was observed in Thermotoga strains id="__tag_598020850" class="tag_hotlink" href="uccore/AE000512" ref="uccore/AE000512">{"type":"entrez-nucleotide","attrs":{"text":"AE000512","term_id":"12057205","term_text":"AE000512"}}AE000512 & id="__tag_598020858" class="tag_hotlink" href="uccore/NC_000853" ref="uccore/NC_000853">{"type":"entrez-nucleotide","attrs":{"text":"NC_000853","term_id":"15642775","term_text":"NC_000853"}}NC_000853 (69 %GC), followed by id="__tag_598020848" class="tag_hotlink" href="uccore/NZ_CP011108" ref="uccore/NZ_CP011108">{"type":"entrez-nucleotide","attrs":{"text":"NZ_CP011108","term_id":"814569391","term_text":"NZ_CP011108"}}NZ_CP011108, id="__tag_598020782" class="tag_hotlink" href="uccore/CP011108" ref="uccore/CP011108">{"type":"entrez-nucleotide","attrs":{"text":"CP011108","term_id":"811641277","term_text":"CP011108"}}CP011108, id="__tag_598020806" class="tag_hotlink" href="uccore/NZ_CP011107" ref="uccore/NZ_CP011107">{"type":"entrez-nucleotide","attrs":{"text":"NZ_CP011107","term_id":"814575687","term_text":"NZ_CP011107"}}NZ_CP011107, id="__tag_598020788" class="tag_hotlink" href="uccore/NC_023151" ref="uccore/NC_023151">{"type":"entrez-nucleotide","attrs":{"text":"NC_023151","term_id":"568317838","term_text":"NC_023151"}}NC_023151, id="__tag_598020780" class="tag_hotlink" href="uccore/NC_021214" ref="uccore/NC_021214">{"type":"entrez-nucleotide","attrs":{"text":"NC_021214","term_id":"499078742","term_text":"NC_021214"}}NC_021214, id="__tag_598020867" class="tag_hotlink" href="uccore/CP011107" ref="uccore/CP011107">{"type":"entrez-nucleotide","attrs":{"text":"CP011107","term_id":"811639337","term_text":"CP011107"}}CP011107 & id="__tag_598020821" class="tag_hotlink" href="uccore/CP004077" ref="uccore/CP004077">{"type":"entrez-nucleotide","attrs":{"text":"CP004077","term_id":"498539165","term_text":"CP004077"}}CP004077 (68.5 %GC), followed by id="__tag_598020784" class="tag_hotlink" href="uccore/NZ_CP010967" ref="uccore/NZ_CP010967">{"type":"entrez-nucleotide","attrs":{"text":"NZ_CP010967","term_id":"814569421","term_text":"NZ_CP010967"}}NZ_CP010967 & id="__tag_598020860" class="tag_hotlink" href="uccore/CP010967" ref="uccore/CP010967">{"type":"entrez-nucleotide","attrs":{"text":"CP010967","term_id":"811629352","term_text":"CP010967"}}CP010967 (68.3 %GC), followed by id="__tag_598020775" class="tag_hotlink" href="uccore/CP000916" ref="uccore/CP000916">{"type":"entrez-nucleotide","attrs":{"text":"CP000916","term_id":"221571364","term_text":"CP000916"}}CP000916, id="__tag_598020817" class="tag_hotlink" href="uccore/CP007013" ref="uccore/CP007013">{"type":"entrez-nucleotide","attrs":{"text":"CP007013","term_id":"568242599","term_text":"CP007013"}}CP007013 & id="__tag_598020838" class="tag_hotlink" href="uccore/NC_011978" ref="uccore/NC_011978">{"type":"entrez-nucleotide","attrs":{"text":"NC_011978","term_id":"222098974","term_text":"NC_011978"}}NC_011978 (68 %GC), followed by id="__tag_598020853" class="tag_hotlink" href="uccore/CP002351" ref="uccore/CP002351">{"type":"entrez-nucleotide","attrs":{"text":"CP002351","term_id":"335364163","term_text":"CP002351"}}CP002351 & id="__tag_598020820" class="tag_hotlink" href="uccore/NC_015707" ref="uccore/NC_015707">{"type":"entrez-nucleotide","attrs":{"text":"NC_015707","term_id":"338729812","term_text":"NC_015707"}}NC_015707 (67 %GC) strains. The use of GC dataset ratios helps in higher level hierarchical classification in Bacterial Systematics in addition to phenotypic and other genotypic characters.
机译：总共16株嗜热嗜热菌完整的基因组序列即。从NCBI BioSample数据库中检索了完整的基因组序列，其中包括海栖嗜热菌（``，，，，，，，，，，，，＆），Thermotoga neapolitana（，＆）和Thermotherga thermarum（＆）。 ENDMEMO GC用于在Thermotoga sp。中创建有关GC内容的数据。 DNA序列。在Thermotoga菌株id="__tag_598020850" class="tag_hotlink" href="uccore/AE000512" ref="uccore/AE000512"> {“ type”：“ entrez-nucleotide”，“ attrs”中观察到最大的GC含量“：{” text“：” AE000512“，” term_id“：” 12057205“，” term_text“：” AE000512“}} AE000512 ＆id =” __ tag_598020858“ class =” tag_hotlink“ href =” / nuccore / NC_000853“ ref =” / nuccore / NC_000853“> {” type“：” entrez-nucleotide“，” attrs“：{” text“：” NC_000853“，” term_id“：” 15642775“，” term_text“：” NC_000853“}} NC_000853 （69％GC），后跟id="__tag_598020848" class="tag_hotlink" href="uccore/NZ_CP011108" ref="uccore/NZ_CP011108"> {” type“ ：“ entrez-nucleotide”，“ attrs”：{“ text”：“ NZ_CP011108”，“ term_id”：“ 814569391”，“ term_text”：“ NZ_CP011108”}} NZ_CP011108 ，id =“ __ tag_598020782” class =“ tag_hotlink” href =“ / nuccore / CP011108” ref =“ / nuccore / CP011108”> {“ type”：“ entrez-nucleotide”，“ attrs”：{“ text”：“ CP011108”，“ term_id”： “ 811641277”，“ term_text”：“ CP011108”}} CP011108 ，id =“ __ tag_598020806” class =“ tag_hotlink” href =“ / nuccore / NZ_CP011107”重新f =“ / nuccore / NZ_CP011107”> {“ type”：“ entrez-nucleotide”，“ attrs”：{“ text”：“ NZ_CP011107”，“ term_id”：“ 814575687”，“ term_text”：“ NZ_CP011107”}} NZ_CP011107 ，id="__tag_598020788" class="tag_hotlink" href="uccore/NC_023151" ref="uccore/NC_023151"> {“ type”：“ entrez-nucleotide”，“ attrs”： {“ text”：“ NC_023151”，“ term_id”：“ 568317838”，“ term_text”：“ NC_023151”}} NC_023151 ，id =“ __ tag_598020780” class =“ tag_hotlink” href =“ / nuccore / NC_021214“ ref =” / nuccore / NC_021214“> {” type“：” entrez-nucleotide“，” attrs“：{” text“：” NC_021214“，” term_id“：” 499078742“，” term_text“：” NC_021214“ }} NC_021214 ，id="__tag_598020867" class="tag_hotlink" href="uccore/CP011107" ref="uccore/CP011107"> {“ type”：“ entrez-nucleotide”，“ attrs “：{” text“：” CP011107“，” term_id“：” 811639337“，” term_text“：” CP011107“}} CP011107 ＆id =” __ tag_598020821“ class =” tag_hotlink“ href =” / nuccore / CP004077“ ref =” / nuccore / CP004077“> {” type“：” entrez-nucleotide“，” attrs“：{” text“：” CP004077“，” term_id“：” 498539165“，” term_text“：” CP004077“}} CP004077 （68.5％GC ），后跟id="__tag_598020784" class="tag_hotlink" href="uccore/NZ_CP010967" ref="uccore/NZ_CP010967"> {“ type”：“ entrez-nucleotide”，“ attrs”：{“ text“：” NZ_CP010967“，” term_id“：” 814569421“，” term_text“：” NZ_CP010967“}} NZ_CP010967 ＆id =” __ tag_598020860“ class =” tag_hotlink“ href =” / nuccore / CP010967“ ref =“ / nuccore / CP010967”> {“ type”：“ entrez-nucleotide”，“ attrs”：{“ text”：“ CP010967”，“ term_id”：“ 811629352”，“ term_text”：“ CP010967”}} CP010967 （68.3％GC），后跟id="__tag_598020775" class="tag_hotlink" href="uccore/CP000916" ref="uccore/CP000916"> {“ type”：“ entrez-核苷酸”，“ attrs”：{“ text”：“ CP000916”，“ term_id”：“ 221571364”，“ term_text”：“ CP000916”}} CP000916 ，id =“ __ tag_598020817” class =“ tag_hotlink “ href =” / nuccore / CP007013“ ref =” / nuccore / CP007013“> {” type“：” entrez-nucleotide“，” attrs“：{” text“：” CP007013“，” term_id“：” 568242599“， “ term_text”：“ CP007013”}} CP007013 ＆id="__tag_598020838" class="tag_hotlink" href="uccore/NC_011978" ref="uccore/NC_011978"> {“ type”：“ entrez-nu cleotide“，” attrs“：{” text“：” NC_011978“，” term_id“：” 222098974“，” term_text“：” NC_011978“}} NC_011978 （68％GC），后跟id = “ __tag_598020853” class =“ tag_hotlink” href =“ / nuccore / CP002351” ref =“ / nuccore / CP002351”> {“ type”：“ entrez-nucleotide”，“ attrs”：{“ text”：“ CP002351”，“ term_id“：” 335364163“，” term_text“：” CP002351“}} CP002351 ＆id =” __ tag_598020820“ class =” tag_hotlink“ href =” / nuccore / NC_015707“ ref =” / nuccore / NC_015707“ > {“ type”：“ entrez-nucleotide”，“ attrs”：{“ text”：“ NC_015707”，“ term_id”：“ 338729812”，“ term_text”：“ NC_015707”}} NC_015707 （67％ GC）菌株。除了表型和其他基因型特征，GC数据集比率的使用还有助于细菌系统学中的更高层次的分类。

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