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Variable Field Analytical Ultracentrifugation: II. Gravitational Sweep Sedimentation Velocity

机译:可变场分析超速离心:II。重力扫沙速度

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摘要

Sedimentation velocity (SV) analytical ultracentrifugation is a classical biophysical technique for the determination of the size-distribution of macromolecules, macromolecular complexes, and nanoparticles. SV has traditionally been carried out at a constant rotor speed, which limits the range of sedimentation coefficients that can be detected in a single experiment. Recently we have introduced methods to implement experiments with variable rotor speeds, in combination with variable field solutions to the Lamm equation, with the application to expedite the approach to sedimentation equilibrium. Here, we describe the use of variable-field sedimentation analysis to increase the size-range covered in SV experiments by ∼100-fold with a quasi-continuous increase of rotor speed during the experiment. Such a gravitational-sweep sedimentation approach has previously been shown to be very effective in the study of nanoparticles with large size ranges. In the past, diffusion processes were not accounted for, thereby posing a lower limit of particle sizes and limiting the accuracy of the size distribution. In this work, we combine variable field solutions to the Lamm equation with diffusion-deconvoluted sedimentation coefficient distributions c(s), which further extend the macromolecular size range that can be observed in a single SV experiment while maintaining accuracy and resolution. In this way, approximately five orders of magnitude of sedimentation coefficients, or eight orders of magnitude of particle mass, can be probed in a single experiment. This can be useful, for example, in the study of proteins forming large assemblies, as in fibrillation process or capsid self-assembly, in studies of the interaction between very dissimilar-sized macromolecular species, or in the study of broadly distributed nanoparticles.
机译:沉降速度(SV)分析超速离心是一种经典的生物物理技术,用于确定大分子,大分子复合物和纳米颗粒的尺寸分布。传统上,SV是在恒定转子速度下进行的,这限制了可以在单个实验中检测到的沉降系数的范围。最近,我们引入了用于以可变转子速度进行实验的方法,并结合Lamm方程的可变场解,以加快沉积平衡的方法的应用。在这里,我们描述了使用变场沉降分析将SV实验中覆盖的尺寸范围增加约100倍,同时在实验过程中转子速度近似连续增加。先前已证明这种重力扫描沉降方法在研究大尺寸纳米颗粒方面非常有效。过去,没有考虑扩散过程,因此造成了粒径的下限并限制了粒径分布的准确性。在这项工作中,我们将Lamm方程的变场解与扩散解卷积的沉降系数分布c(s)结合起来,进一步扩展了可以在单个SV实验中观察到的大分子尺寸范围,同时保持了精度和分辨率。这样,可以在一个实验中探测到大约五个数量级的沉降系数,或者八个数量级的颗粒质量。例如,这在研究形成大集合体的蛋白质时(如在原纤化过程或衣壳自组装中),在大小相异的大分子物种之间相互作用的研究中或在广泛分布的纳米粒子的研究中可能是有用的。

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