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FNV: light-weight flash-based network and pathway viewer

机译:FNV:轻量级的基于Flash的网络和路径查看器

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摘要

>Motivation: Network diagrams are commonly used to visualize biochemical pathways by displaying the relationships between genes, proteins, mRNAs, microRNAs, metabolites, regulatory DNA elements, diseases, viruses and drugs. While there are several currently available web-based pathway viewers, there is still room for improvement. To this end, we have developed a flash-based network viewer (FNV) for the visualization of small to moderately sized biological networks and pathways.>Summary: Written in Adobe ActionScript 3.0, the viewer accepts simple Extensible Markup Language (XML) formatted input files to display pathways in vector graphics on any web-page providing flexible layout options, interactivity with the user through tool tips, hyperlinks and the ability to rearrange nodes on the screen. FNV was utilized as a component in several web-based systems, namely Genes2Networks, Lists2Networks, KEA, ChEA and PathwayGenerator. In addition, FVN can be used to embed pathways inside pdf files for the communication of pathways in soft publication materials.>Availability: FNV is available for use and download along with the supporting documentation and sample networks at .>Contact:
机译:>动机:网络图通常用于通过显示基因,蛋白质,mRNA,microRNA,代谢产物,调节性DNA元素,疾病,病毒和药物之间的关系来可视化生化途径。尽管目前有几种基于Web的途径查看器,但仍有改进的空间。为此,我们开发了基于Flash的网络查看器(FNV),用于可视化小型到中型的生物网络和路径。>摘要:该查看器使用Adobe ActionScript 3.0编写,接受简单的可扩展标记。语言(XML)格式的输入文件可在任何网页上的矢量图形中显示路径,从而提供灵活的布局选项,通过工具提示与用户互动,超链接以及在屏幕上重新排列节点的能力。 FNV被用作几个基于Web的系统的组件,即Genes2Networks,Lists2Networks,KEA,ChEA和PathwayGenerator。此外,FVN可用于将路径嵌入pdf文件中,以便在软出版物中传达路径。>可用性: FNV可与支持文档和示例网络一起使用和下载。 strong>联系方式:

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