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ModelDB: an environment for running and storing computational models and their results applied to neuroscience.

机译:ModelDB:一种用于运行和存储计算模型并将其结果应用于神经科学的环境。

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摘要

Research groups within the Human Brain Project are developing technologies to help organize and make accessible the vast quantities of information being accumulated in the neurosciences. The goal of this work is to provide systems that enable this complex information from many diverse sources to be synthesized into a coherent theory of nervous system function. Our initial approach to this problem has been to create several small databases. While addressing the issues of each individual database, we are also considering how each might be incorporated into an integrated cluster of databases. In this paper, we describe a pilot project in which we construct a database of computational models of neuronal function. This database allows models to be created and run and their results reviewed through a World Wide Web interface. Because models encapsulate knowledge in a formal manner about how neuronal systems function, we also discuss how this database forms a natural center for our initial attempts at creating a cluster of related databases. General issues of database development in the context of the Web are also discussed.
机译:人脑计划中的研究小组正在开发技术,以帮助组织和访问神经科学中积累的大量信息。这项工作的目的是提供一种系统,使来自许多不同来源的这种复杂信息能够被合成为神经系统功能的连贯理论。解决此问题的最初方法是创建几个小型数据库。在解决每个数据库的问题时,我们也在考虑如何将每个数据库合并到一个集成的数据库集群中。在本文中,我们描述了一个试点项目,其中我们构建了神经元功能计算模型的数据库。该数据库允许创建和运行模型,并通过万维网界面查看其结果。因为模型以形式化的方式封装了有关神经元系统如何运行的知识,所以我们还将讨论该数据库如何构成我们创建相关数据库集群的最初尝试的自然中心。还讨论了在Web上下文中数据库开发的一般问题。

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