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Diversity time-period and diversity-time-area relationships exemplified by the human microbiome

机译:人类微生物组例证的多样性时间周期和多样性时间区域关系

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摘要

We extend the ecological laws of species-time relationship (STR) and species-time-area relationship (STAR) to general diversity time-period relationship (DTR) and diversity-time-area relationship (DTAR), and test the extensions with the human vaginal microbiome datasets by building 1460 DTR/DTAR models. Our extensions were inspired by the observation that Hill numbers, well regarded as the most appropriate measure of alpha-diversity and also particularly suitable for multiplicative beta-diversity partitioning, are actually in the units of effective species, and therefore, should be able to substitute for species in the STR and STAR. We found that the traditional power law (PL) model is only applicable for DTR at diversity order zero (i.e., species richness); at higher diversity orders (q = 1–4), the power law with exponent cutoff (PLEC) and power law with inverse exponent cutoff (PLIEC) are more appropriate. In particular, PLEC has an advantage over PLIEC in predicting maximal accumulation diversity (MAD) over time. In fact, with the DTR extensions, we can construct DTR and MAD profiles. To the best of our knowledge, this is the first comprehensive investigation of the DTR/DTAR in human microbiome. Methodologically, our DTR/DTAR profiles can characterize general diversity scaling beyond species richness, covering both alpha- and beta-diversity regimes across different diversity orders.
机译:我们将物种-时间关系(STR)和物种-时间-区域关系(STAR)的生态规律扩展到一般多样性时间-时期关系(DTR)和多样性-时间-区域关系(DTAR),并使用通过建立1460 DTR / DTAR模型建立人类阴道微生物组数据集。我们的扩展得益于以下观察结果:希尔数实际上被认为是有效物种的单位,因此,希尔数被公认为是最合适的α多样性度量,并且也特别适合于乘法β多样性分区,因此应该可以替代用于STR和STAR中的物种。我们发现传统幂律(PL)模型仅适用于多样性阶次为零(即物种丰富度)的DTR;在较高的分集阶数(q = 1-4)下,具有指数截止的幂定律(PLEC)和具有反指数截止的幂定律(PLIEC)更合适。特别是,在预测随时间变化的最大累积分集(MAD)方面,PLEC优于PLIEC。实际上,通过DTR扩展,我们可以构造DTR和MAD配置文件。据我们所知,这是人类微生物组中DTR / DTAR的首次综合研究。从方法上讲,我们的DTR / DTAR资料可以描述物种多样性以外的一般多样性尺度,涵盖不同多样性阶次的α和β多样性制度。

著录项

  • 期刊名称 Scientific Reports
  • 作者

    Zhanshan (Sam) Ma;

  • 作者单位
  • 年(卷),期 -1(8),-1
  • 年度 -1
  • 页码 7214
  • 总页数 16
  • 原文格式 PDF
  • 正文语种
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