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Pharos: Collating protein information to shed light on the druggable genome

机译:Pharos:整理蛋白质信息以阐明可药物基因组

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摘要

The ‘druggable genome’ encompasses several protein families, but only a subset of targets within them have attracted significant research attention and thus have information about them publicly available. The Illuminating the Druggable Genome (IDG) program was initiated in 2014, has the goal of developing experimental techniques and a Knowledge Management Center (KMC) that would collect and organize information about protein targets from four families, representing the most common druggable targets with an emphasis on understudied proteins. Here, we describe two resources developed by the KMC: the Target Central Resource Database (TCRD) which collates many heterogeneous gene/protein datasets and Pharos (), a multimodal web interface that presents the data from TCRD. We briefly describe the types and sources of data considered by the KMC and then highlight features of the Pharos interface designed to enable intuitive access to the IDG knowledgebase. The aim of Pharos is to encourage ‘serendipitous browsing’, whereby related, relevant information is made easily discoverable. We conclude by describing two use cases that highlight the utility of Pharos and TCRD.
机译:“可食用基因组”包含多个蛋白质家族,但是其中只有一部分靶标引起了研究的广泛关注,因此有关它们的信息可公开获得。启发药物基因组(IDG)计划于2014年启动,其目标是开发实验技术和知识管理中心(KMC),该中心将收集和整理来自四个家族的蛋白质靶标信息,代表了最常见的药物靶标,其中包括强调研究不足的蛋白质。在这里,我们描述了KMC开发的两种资源:目标中央资源数据库(TCRD)(可收集许多异构基因/蛋白质数据集)和Pharos(),一种多模式Web界面,可显示TCRD的数据。我们简要描述了KMC考虑的数据类型和数据源,然后重点介绍了Pharos界面的功能,该界面旨在使人们能够直观地访问IDG知识库。 Pharos的目的是鼓励“偶然浏览”,使相关的相关信息易于发现。最后,我们通过描述两个用例来突出Pharos和TCRD的实用性。

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