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Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics

机译:猕猴桃信息资源(KIR):猕猴桃基因组学的比较平台

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摘要

The Kiwifruit Information Resource (KIR) is dedicated to maintain and integrate comprehensive datasets on genomics, functional genomics and transcriptomics of kiwifruit (Actinidiaceae). KIR serves as a central access point for existingew genomic and genetic data. KIR also provides researchers with a variety of visualization and analysis tools. Current developments include the updated genome structure of Actinidia chinensis cv. Hongyang and its newest genome annotation, putative transcripts, gene expression, physical markers of genetic traits as well as relevant publications based on the latest genome assembly. Nine thousand five hundred and forty-seven new transcripts are detected and 21 132 old transcripts are changed. At the present release, the next-generation transcriptome sequencing data has been incorporated into gene models and splice variants. Protein–protein interactions are also identified based on experimentally determined orthologous interactions. Furthermore, the experimental results reported in peer-reviewed literature are manually extracted and integrated within a well-developed query page. In total, 122 identifications are currently associated, including commonly used gene names and symbols. All KIR datasets are helpful to facilitate a broad range of kiwifruit research topics and freely available to the research community.>Database URL: .
机译:猕猴桃信息资源(KIR)致力于维护和整合有关猕猴桃(猕猴桃科)基因组学,功能基因组学和转录组学的综合数据集。 KIR是现有/新的基因组和遗传数据的中央访问点。 KIR还为研究人员提供了各种可视化和分析工具。当前的发展包括猕猴桃cv的更新的基因组结构。弘阳及其最新的基因组注释,推定的转录本,基因表达,遗传特征的物理标记以及基于最新基因组汇编的相关出版物。检测到9.547万个新成绩单,并更改了21132个旧成绩单。在当前版本中,下一代转录组测序数据已被整合到基因模型和剪接变体中。还可以根据实验确定的直系同源相互作用鉴定蛋白质之间的相互作用。此外,在同行评审文献中报告的实验结果是手动提取的,并集成在完善的查询页面中。当前总共有122个标识,包括常用的基因名称和符号。所有KIR数据集都有助于促进广泛的猕猴桃研究主题,并且可供研究团体免费使用。>数据库URL :。

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