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Microbial Communities in a Flow-Through Fish Farm for Lumpfish (Cyclopterus lumpus L.) During Healthy Rearing Conditions

机译:在健康饲养条件下ump鱼(Cyclopterus lumpus L.)直通鱼场中的微生物群落

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摘要

Lumpfish can efficiently remove sea lice from Atlantic salmon in net-pens, and production of lumpfish in closed fish farms is a new, fast developing industry in Norway. However, periodic outbreaks of bacterial diseases in the fish farms represent a large problem, both economically and ethically. Therefore it is important to obtain a better understanding of how microbial communities develop in these production facilities. Knowledge on the characteristics of microbial communities associated with healthy fish could also enable detection of changes associated with disease outbreaks at an early stage. In this study we have monitored microbial communities in a fish farm for lumpfish during normal operational conditions with no disease outbreak by using 16S rRNA gene amplicon sequencing. The study involved weekly samplings of water and biofilms from fish tanks, and fish. The results revealed that the microbial communities in fish tank water were different from the intake water. The water and biofilm in fish tanks were highly similar in regards to microbial community members, but with large differences in relative abundances for some taxa. The sampled fish were associated with mostly the same taxa as in tank water and biofilm, but more variation in relative abundances of different taxonomic groups occurred. The microbial communities in the fish farm seemed stable over time, and were dominated by marine bacteria and archaea within Alphaproteobacteria, Epsilonproteobacteria, Flavobacteria, Gammaproteobacteria, Thaumarchaeota, Planctomycetes, Sphingobacteriia, and Verrucomicrobiae (>10% relative abundance). Bacterial genera known to include fish-pathogenic strains were detected in all types of sample materials, but with low relative abundances (<5%). Exceptions were some samples of fish, biofilm and water with high relative abundance of Tenacibaculum (<85.8%) and Moritella (<82%). In addition, some of the eggs had a high relative abundance of Tenacibaculum (<89.5%). Overall, this study shows that a stable microbial community dominated by various genera of non-pathogenic bacteria is associated with a healthy environment for rearing lumpfish. Taxa with pathogenic members were also part of the microbial communities during healthy conditions, but the stable non-pathogenic bacteria may limit their growth and thereby prevent disease outbreaks.
机译:ump鱼可以有效地从网箱中的大西洋鲑鱼中去除海虱,在封闭的养鱼场中生产ump鱼是挪威新兴的快速发展的产业。然而,从经济和道德角度来看,养鱼场中细菌疾病的周期性暴发是一个大问题。因此,重要的是要更好地了解这些生产设施中微生物群落的发育方式。关于与健康鱼有关的微生物群落特征的知识也可以在早期发现与疾病暴发有关的变化。在这项研究中,我们通过使用16S rRNA基因扩增子测序,在正常操作条件下且无病暴发的情况下,对monitored鱼养殖场中的微生物群落进行了监测。该研究涉及每周从鱼缸和鱼中抽取水和生物膜的采样。结果表明,鱼缸水中的微生物群落与进水不同。就微生物群落成员而言,鱼缸中的水和生物膜高度相似,但某些种类的相对丰度差异很大。采样的鱼与水箱水和生物膜中的分类单元大致相同,但是不同分类组的相对丰度发生了更大的变化。养鱼场中的微生物群落随着时间的推移似乎保持稳定,并被海生细菌和古细菌所控制,这些细菌包括古生细菌,E细菌,细菌,黄细菌,丙种细菌,丘生古细菌,浮生菌,鞘氨醇杆菌和疣状微生物(相对含量> 10%)。在所有类型的样品材料中均检出了已知的细菌致病菌株,但相对丰度较低(<5%)。鱼类,生物被膜和水的一些样品除外,这些样品中的丁酸球菌(<85.8%)和莫里氏菌(<82%)的相对丰度很高。此外,一些鸡蛋的腱生蛋白相对丰度较高(<89.5%)。总体而言,这项研究表明,由各种非致病菌组成的稳定的微生物群落与饲养ump鱼的健康环境有关。在健康状况下,具有致病成员的分类单元也是微生物群落的一部分,但是稳定的非致病细菌可能会限制其生长,从而防止疾病暴发。

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