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Computational design of symmetrical eight-bladed β-propeller proteins

机译:对称八叶β螺旋桨蛋白质的计算设计

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摘要

β-Propeller proteins form one of the largest families of protein structures, with a pseudo-symmetrical fold made up of subdomains called blades. They are not only abundant but are also involved in a wide variety of cellular processes, often by acting as a platform for the assembly of protein complexes. WD40 proteins are a subfamily of propeller proteins with no intrinsic enzymatic activity, but their stable, modular architecture and versatile surface have allowed evolution to adapt them to many vital roles. By computationally reverse-engineering the duplication, fusion and diversification events in the evolutionary history of a WD40 protein, a perfectly symmetrical homologue called Tako8 was made. If two or four blades of Tako8 are expressed as single polypeptides, they do not self-assemble to complete the eight-bladed architecture, which may be owing to the closely spaced negative charges inside the ring. A different computational approach was employed to redesign Tako8 to create Ika8, a fourfold-symmetrical protein in which neighbouring blades carry compensating charges. Ika2 and Ika4, carrying two or four blades per subunit, respectively, were found to assemble spontaneously into a complete eight-bladed ring in solution. These artificial eight-bladed rings may find applications in bionanotechnology and as models to study the folding and evolution of WD40 proteins.
机译:β-螺旋蛋白形成最大的蛋白质结构家族之一,其假对称折叠由称为叶片的亚结构域组成。它们不仅数量丰富,而且经常通过充当蛋白质复合物组装的平台而参与多种细胞过程。 WD40蛋白是螺旋桨蛋白的一个亚家族,没有固有的酶促活性,但是其稳定,模块化的结构和多功能的表面使其能够进化以适应多种重要作用。通过对WD40蛋白进化史中的复制,融合和多样化事件进行逆向工程,从而制得了一个名为Tako8的完美对称同源物。如果将Tako8的两个或四个叶片表达为单个多肽,则它们不会自组装以完成八叶结构,这可能是由于环内负电荷的间隔很小。采用了不同的计算方法来重新设计Tako8,以创建Ika8,这是一种四重对称蛋白,其中相邻的刀片携带补偿电荷。发现每个亚基分别带有两个或四个叶片的Ika2和Ika4在溶液中自发组装成完整的八叶环。这些人造的八叶环可以在仿生技术中找到应用,并可以作为模型研究WD40蛋白的折叠和进化。

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