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βα-Hairpin Clamps Brace βαβ Modules and Can Make Substantive Contributions to the Stability of TIM Barrel Proteins

机译:βα-发夹钳支撑βαβ模块可为TIM桶蛋白的稳定性做出实质性贡献

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摘要

Non-local hydrogen bonding interactions between main chain amide hydrogen atoms and polar side chain acceptors that bracket consecutive βα or αβ elements of secondary structure in αTS from E. coli, a TIM barrel protein, have previously been found to contribute 4–6 kcal mol−1 to the stability of the native conformation. Experimental analysis of similar βα-hairpin clamps in a homologous pair of TIM barrel proteins of low sequence identity, IGPS from S. solfataricus and E. coli, reveals that this dramatic enhancement of stability is not unique to αTS. A survey of 71 TIM barrel proteins demonstrates a 4-fold symmetry for the placement of βα-hairpin clamps, bracing the fundamental βαβ building block and defining its register in the (βα)8 motif. The preferred sequences and locations of βα-hairpin clamps will enhance structure prediction algorithms and provide a strategy for engineering stability in TIM barrel proteins.
机译:先前已经发现,TIM桶蛋白大肠杆菌的TS中,主链酰胺氢原子与极性侧链受体之间的非局部氢键相互作用会包围连续的αTS二级结构中的βα或αβ元素,这贡献了4-6 kcal mol。 −1 保持原始构象的稳定性。对具有低序列同一性的TIM桶蛋白,来自S. solfataricus和E. coli的IGPS的同源对中的类似βα-发夹钳进行的实验分析表明,这种显着的稳定性增强并非αTS所独有。对71种TIM桶蛋白的研究表明,β-发夹钳的位置具有4倍的对称性,支撑基本的βαβ结构单元,并在(βα)8基序中定义了其寄存器。 βα-发夹钳的优选序列和位置将增强结构预测算法,并为TIM桶蛋白的工程稳定性提供策略。

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