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PDAWG: An Integrated Database for Plant Cell Wall Genes

机译:PDAWG:植物细胞壁基因的集成数据库

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摘要

We have recently developed a database, pDAWG, focused on information related to plant cell walls. Currently, pDAWG contains seven complete plant genomes, 12 complete algal genomes, along with computed information for individual proteins encoded in these genomes of the following types: (a) carbohydrate active enzyme (CAZy) family information when applicable; (b) phylogenetic trees of cell wall-related CAZy family proteins; (c) protein structure models if available; (d) physical and predicted interactions among proteins; (e) subcellular localization; (f) Pfam domain information; and (g) homology-based functional prediction. A querying system with a graphical interface allows a user to quickly compose information of different sorts about individual genes/proteins and to display the composite information in an intuitive manner, facilitating comparative analyses and knowledge discovery about cell wall genes.
机译:我们最近开发了一个数据库pDAWG,重点是与植物细胞壁相关的信息。目前,pDAWG包含七个完整的植物基因组,十二个完整的藻类基因组,以及在以下类型的这些基因组中编码的单个蛋白质的计算信息:(a)碳水化合物活性酶(CAZy)家族信息(如适用); (b)与细胞壁相关的CAZy家族蛋白的系统树; (c)蛋白质结构模型(如果可用); (d)蛋白质之间的物理相互作用和预测相互作用; (e)亚细胞定位; (f)Pfam域名信息; (g)基于同源性的功能预测。具有图形界面的查询系统允许用户快速组成有关单个基因/蛋白质的不同种类的信息,并以直观的方式显示复合信息,从而有助于对细胞壁基因进行比较分析和知识发现。

著录项

  • 来源
    《Bioenergy research》 |2009年第4期|209-216|共8页
  • 作者单位

    Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, GA 30602, USA DOE BioEnergy Science Center (BESC), Oak Ridge, TO, USA;

    Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, GA 30602, USA DOE BioEnergy Science Center (BESC), Oak Ridge, TO, USA;

    Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, GA 30602, USA DOE BioEnergy Science Center (BESC), Oak Ridge, TO, USA;

    Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, GA 30602, USA DOE BioEnergy Science Center (BESC), Oak Ridge, TO, USA;

    Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, GA 30602, USA DOE BioEnergy Science Center (BESC), Oak Ridge, TO, USA;

    Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, GA 30602, USA DOE BioEnergy Science Center (BESC), Oak Ridge, TO, USA;

    Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, GA 30602, USA DOE BioEnergy Science Center (BESC), Oak Ridge, TO, USA;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    cell wall genes; biological database; bioinformatics; biofuel;

    机译:细胞壁基因;生物数据库;生物信息学生物燃料;

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