DELIMINATE—a fast and efficient method for loss-less compression of genomic sequences

Monzoorul Haque Mohammed Anirban Dutta Tungadri Bose Sudha Chadaram and Sharmila S. Mande*

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DELIMINATE—a fast and efficient method for loss-less compression of genomic sequences

机译：定义—一种快速有效的基因组序列无损压缩方法

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Summary: An unprecedented quantity of genome sequence data is currently being generated using next-generation sequencing platforms. This has necessitated the development of novel bioinformatics approaches and algorithms that not only facilitate a meaningful analysis of these data but also aid in efficient compression, storage, retrieval and transmission of huge volumes of the generated data. We present a novel compression algorithm (DELIMINATE) that can rapidly compress genomic sequence data in a loss-less fashion. Validation results indicate relatively higher compression efficiency of DELIMINATE when compared with popular general purpose compression algorithms, namely, gzip, bzip2 and lzma.

机译：简介：当前正在使用下一代测序平台生成数量空前的基因组序列数据。这就需要开发新颖的生物信息学方法和算法，这些方法和算法不仅有助于对这些数据进行有意义的分析，而且有助于有效地压缩，存储，检索和传输大量生成的数据。我们提出了一种新颖的压缩算法（DELIMINATE），该算法可以以无损方式快速压缩基因组序列数据。验证结果表明，与流行的通用压缩算法gzip，bzip2和lzma相比，DELIMATE的压缩效率相对较高。

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《Bioinformatics》 |2012年第19期|p.2527-2529|共3页
作者
Monzoorul Haque Mohammed Anirban Dutta Tungadri Bose Sudha Chadaram and Sharmila S. Mande*;
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Bio-sciences R&

D Division, TCS Innovation Labs, Tata Consultancy Services Limited, 1 Software Units Layout, Madhapur, Hyderabad 500081, Andhra Pradesh, India;

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收录信息美国《科学引文索引》(SCI);美国《化学文摘》(CA);
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正文语种 eng
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1. DELIMINATE-a fast and efficient method for loss-less compression of genomic sequences [J] . Mohammed Monzoorul Haque, Dutta Anirban, Bose Tungadri, Bioinformatics . 2012,第19期

机译：DELIMINATE-一种快速有效的无损压缩基因组序列的方法
2. A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence. [J] . Gotoh O Nucleic Acids Research . 2008,第8期

机译：一种节省空间的准确方法，可将cDNA序列定位和比对到基因组序列上。
3. A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence. [J] . Gotoh O Nucleic Acids Research . 2008,第8期

机译：一种节省空间的准确方法，可将cDNA序列定位和比对到基因组序列上。
4. Efficient Compression of Genomic Sequences [C] . Diogo Pratas, Armando J. Pinho, Paulo J. S. G. Ferreira Data compression conference . 2016

机译：有效压缩基因组序列
5. Efficient Large-Scale Machine Learning Algorithms for Genomic Sequences [D] . Quang, Daniel. 2017

机译：基因组序列的高效大规模机器学习算法
6. Protein domain architectures provide a fast efficient and scalable alternative to sequence-based methods for comparative functional genomics [O] . Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, -1

机译：蛋白质域结构为比较功能基因组学提供了一种基于序列的方法的快速有效和可扩展的替代方案
7. Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics [O] . Koehorst, J.J., Saccenti, E., Schaap, P.J., 2016

机译：蛋白质域结构为比较功能基因组学提供了一种基于序列的方法的快速，有效和可扩展的替代方案

DELIMINATE—a fast and efficient method for loss-less compression of genomic sequences

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