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A Taxonomic Search Engine: Federating taxonomic databases using web services

机译:分类搜索引擎:使用Web服务联合分类数据库

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Background The taxonomic name of an organism is a key link between different databases that store information on that organism. However, in the absence of a single, comprehensive database of organism names, individual databases lack an easy means of checking the correctness of a name. Furthermore, the same organism may have more than one name, and the same name may apply to more than one organism. Results The Taxonomic Search Engine (TSE) is a web application written in PHP that queries multiple taxonomic databases (ITIS, Index Fungorum, IPNI, NCBI, and uBIO) and summarises the results in a consistent format. It supports "drill-down" queries to retrieve a specific record. The TSE can optionally suggest alternative spellings the user can try. It also acts as a Life Science Identifier (LSID) authority for the source taxonomic databases, providing globally unique identifiers (and associated metadata) for each name. Conclusion The Taxonomic Search Engine is available at http://darwin.zoology.gla.ac.uk/~rpage/portal/ and provides a simple demonstration of the potential of the federated approach to providing access to taxonomic names.
机译:背景生物的生物分类名称是存储该生物信息的不同数据库之间的关键链接。但是,在没有一个单一的,全面的生物名称数据库的情况下,单个数据库缺乏一种检查名称正确性的简便方法。此外,同一生物可能具有多个名称,并且同一名称可能适用于多个生物。结果分类搜索引擎(TSE)是一个用PHP编写的Web应用程序,用于查询多个分类数据库(ITIS,Index Fungorum,IPNI,NCBI和uBIO),并以一致的格式汇总结果。它支持“向下钻取”查询以检索特定记录。 TSE可以选择建议用户尝试使用的替代拼写。它也充当源分类数据库的生命科学标识符(LSID)授权,为每个名称提供全局唯一的标识符(和关联的元数据)。结论分类学搜索引擎可从http://darwin.zoology.gla.ac.uk/~rpage/portal/获得,并简单演示了联邦方法提供对分类学名称的访问的潜力。

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