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Natural Language Processing in aid of FlyBase curators

机译:借助FlyBase策展人的自然语言处理

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摘要

Background Despite increasing interest in applying Natural Language Processing (NLP) to biomedical text, whether this technology can facilitate tasks such as database curation remains unclear. Results PaperBrowser is the first NLP-powered interface that was developed under a user-centered approach to improve the way in which FlyBase curators navigate an article. In this paper, we first discuss how observing curators at work informed the design and evaluation of PaperBrowser. Then, we present how we appraise PaperBrowser's navigational functionalities in a user-based study using a text highlighting task and evaluation criteria of Human-Computer Interaction. Our results show that PaperBrowser reduces the amount of interactions between two highlighting events and therefore improves navigational efficiency by about 58% compared to the navigational mechanism that was previously available to the curators. Moreover, PaperBrowser is shown to provide curators with enhanced navigational utility by over 74% irrespective of the different ways in which they highlight text in the article. Conclusion We show that state-of-the-art performance in certain NLP tasks such as Named Entity Recognition and Anaphora Resolution can be combined with the navigational functionalities of PaperBrowser to support curation quite successfully.
机译:背景技术尽管人们越来越有兴趣将自然语言处理(NLP)应用于生物医学文本,但该技术是否能够促进数据库管理等任务仍不清楚。结果PaperBrowser是第一个基于NLP的界面,该界面是在以用户为中心的方法下开发的,旨在改善FlyBase策展人浏览文章的方式。在本文中,我们首先讨论在工作中观察策展人如何指导PaperBrowser的设计和评估。然后,我们介绍如何使用文本突出显示任务和人机交互评估标准在基于用户的研究中评估PaperBrowser的导航功能。我们的结果表明,与策展人以前可用的导航机制相比,PaperBrowser减少了两个突出显示事件之间的交互量,因此将导航效率提高了约58%。此外,PaperBrowser被显示为策展人提供了超过74%的增强的导航实用性,无论他们在文章中突出显示文本的方式如何。结论我们证明了在某些NLP任务(例如命名实体识别和回指解析)中的最新性能可以与PaperBrowser的导航功能相结合,从而非常成功地支持策展。

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