De novo transcriptome sequencing in Frankliniella occidentalis to identify genes involved in plant virus transmission and insecticide resistance

Zhijun Zhang; Pengjun Zhang; Weidi Li; Jinming Zhang; Fang Huang; Jian Yang; Yawei Bei; Yaobin Lu

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De novo transcriptome sequencing in Frankliniella occidentalis to identify genes involved in plant virus transmission and insecticide resistance

机译：西方富兰克氏菌的从头转录组测序以鉴定参与植物病毒传播和杀虫剂抗性的基因

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Thewesternflowerthrips(WFT),emFrankliniellaoccidentalis/em,aworld-wideinvasiveinsect,causesagriculturaldamagebydirectlyfeedingandbyindirectlyvectoringTospoviruses,suchasemTomatospottedwiltvirus/em(TSWV).WecharacterizedthetranscriptomeofWFTandanalyzedglobalgeneexpressionofWFTresponsetoTSWVinfectionusingIlluminasequencingplatform.Wecompiled59,932unigenes,andidentified36,339unigenesbysimilarityanalysisagainstpublicdatabases,mostofwhichwereannotatedusinggeneontology(GO)andKyotoEncyclopediaofGenesandGenomes(KEGG)analysis.Withintheseannotatedtranscripts,wecollected278sequencesrelatedtoinsecticideresistance.GOandKEGGanalysisofdifferentexpressiongenesbetweenTSWV-infectedandnon-infectedWFTpopulationrevealedthatTSWVcanregulatecellularprocessandimmuneresponse,whichmightleadtolowvirustitersinthripscellsandnodetrimentaleffectsonemF.occidentalis/em.Thisdata-setnotonlyenrichesgenomicresourceforWFT,butalsobenefitsresearchintoitsmoleculargeneticsandfunctionalgenomics./p/div

机译：Thewesternflowerthrips（WFT）， Frankliniellaoccidentalis ，aworld-wideinvasiveinsect，causesagriculturaldamagebydirectlyfeedingandbyindirectlyvectoringTospoviruses，suchas Tomatospottedwiltvirus （TSWV）.WecharacterizedthetranscriptomeofWFTandanalyzedglobalgeneexpressionofWFTresponsetoTSWVinfectionusingIlluminasequencingplatform.Wecompiled59,932unigenes，andidentified36,339unigenesbysimilarityanalysisagainstpublicdatabases，mostofwhichwereannotatedusinggeneontology（GO）andKyotoEncyclopediaofGenesandGenomes（KEGG ）analysis.Withintheseannotatedtranscripts，wecollected278sequencesrelatedtoinsecticideresistance.GOandKEGGanalysisofdifferentexpressiongenesbetweenTSWV-infectedandnon-infectedWFTpopulationrevealedthatTSWVcanregulatecellularprocessandimmuneresponse，whichmightleadtolowvirustitersinthripscellsandnodetrimentaleffectson F.occidentalis .Thisdata-setnotonlyenrichesgenomicresourceforWFT，butalsobenefitsresearchintoitsmoleculargeneticsandfunctionalgenomics。 展开▼

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《Genomics》 |2013年第5期|共页

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Zhijun Zhang; Pengjun Zhang; Weidi Li; Jinming Zhang; Fang Huang; Jian Yang; Yawei Bei; Yaobin Lu;
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中图分类医学遗传学;

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1. De novo transcriptome sequencing in Frankliniella occidentalis to identify genes involved in plant virus transmission and insecticide resistance [J] . ZhangZ., ZhangP., LiW., Genomics . 2013,第5期

机译：西方富兰克氏菌的从头转录组测序以鉴定参与植物病毒传播和杀虫剂抗性的基因

2. Whole genome sequencing of Asia II 1 species of whitefly reveals that genes involved in virus transmission and insecticide resistance have genetic variances between Asia II 1 and MEAM1 species [J] . Sonia Hussain, Muhammad Farooq, Hassan Jamil Malik, BMC Genomics . 2019,第1期

机译：亚洲II的全基因组测序1种粉虱揭示了病毒传播和杀虫剂抗性的基因在亚洲II 1和MEAM1物种之间具有遗传差异

3. De novo sequencing of tree peony (Paeonia suffruticosa) transcriptome to identify critical genes involved in flowering and floral organ development [J] . Shunli Wang, Jie Gao, Jingqi Xue, BMC Genomics . 2019,第1期

机译：树牡丹（Paeonia suffruticosa）转录组的Novo测序，以识别涉及开花和花香器官发展的关键基因

4. De Novo Assembly of Uca minax Transcriptome from Next Generation Sequencing [C] . Hanin Omar, Casey A. Cole, Arjang Fahim, International Conference on Bioinformatics and Computational Biology . 2015

机译：从下一代测序的UCA Minax转录组的De Novo组装

5. Impact of Tomato spotted wilt virus (Family Bunyaviridae, Genus Tospovirus) On Western Flower Thrips ( Frankliniella occidentalis) Feeding Behaviors and Analysis of the Adult Salivary Gland Transcriptome. [D] . Stafford-Banks, Candice Ann. 2013

机译：番茄斑萎病病毒（布尼亚病毒科，弓形虫属）对西花蓟马（Frankliniella occidentalis）的取食行为和成年唾液腺转录组的分析。

6. Whole genome sequencing of Asia II 1 species of whitefly reveals that genes involved in virus transmission and insecticide resistance have genetic variances between Asia II 1 and MEAM1 species [O] . Sonia Hussain, Muhammad Farooq, Hassan Jamil Malik, 2019

机译：亚洲II 1种粉虱的全基因组测序显示与病毒传播和杀虫剂抗性有关的基因在Asia II 1和MEAM1种之间具有遗传差异

7. De novo transcriptome sequencing in Frankliniella occidentalis to identify genes involved in plant virus transmission and insecticide resistance [O] . Zhang Zhijun, Zhang Pengjun, Li Weidi, 2013

机译：西方富兰克氏菌的从头转录组测序，鉴定涉及植物病毒传播和杀虫剂抗性的基因

1. 根瘤菌中的nodD基因人与弗兰克氏菌（Frankia）中的类nodD基因… [J] . 陈荣基 ,柏学亮 . 广西农业大学学报 . 1994,第004期

2. 克雷伯氏菌属(Klebsiella)细菌比较基因组学分析揭示多复制子抗性质粒介导广泛的抗性基因传播 [J] . 王雪 ,阳建春 ,贾仲昕 . 微生物学报 . 2021,第009期

3. 假单胞菌基因赋予转基因植物对假单胞菌的抗性 [J] . 朱遐 . 生物技术通报 . 1993,第005期

4. 玉米尾孢菌灰斑病抗性种质鉴定及其抗性基因分析 [J] . 谭静 ,罗吉 ,王文瑞 . 江苏农业学报 . 2020,第006期

5. 植物病原菌拮抗性野生艾蒿内生菌的分离、筛选和鉴定 [J] . 徐亚军 ,赵龙飞 ,陈普 . 生态学报 . 2013,第012期

6. 优质鸡沙门氏菌抗性基因变异的鉴定 [C] . 张泽樘 ,陈卓宇 ,罗庆斌 . 第十六次全国动物遗传育种学术讨论会暨纪念吴仲贤先生诞辰100周年大会 . 2011

7. 沙棘弗兰克氏和非弗兰克氏放线菌的分离、培养及分子鉴定 [A] . 徐瑞瑞 . 2011

1. 一种不含抗性标记的猪霍乱沙门氏菌双基因缺失菌及其应用 [P] . 中国专利： CN102732442A . 2012-10-17

2. 鸡肠炎沙门氏菌病抗性相关基因TLR15基因SNP分型试剂盒 [P] . 中国专利： CN202017026U . 2011.10.26

3. METHODS FOR IDENTIFYING A FIRST CORN OR GERM PLASM PLANT THAT HAS NEWLY CONFERRED RESISTANCE OR INCREASED RESISTANCE OR SUSCEPTIBILITY TO A FIJIVIRUS; PLANT OF CORN INTRODUCED OR GERMOPLASM INTRODUCED; METHOD OF PRODUCTION OF A CORN PLANT PRESENTING NEWLY CONFERTED RESISTANCE OR INCREASED RESISTANCE TO A FIJIVIRUS; SELECTION METHOD OF AT LEAST ONE CORN PLANT THROUGH SELECTION ASSISTED BY A QUANTITATIVE TRACE PLUS ASSOCIATED WITH RECOMMENDED RESISTANCE OR INCREASED RESISTANCE TO A FUJIVIRUS. [P] . 外国专利： BRPI0818409A2 . 2015-02-18

机译：鉴定新赋予耐性或对耐斐济病毒的敏感性或敏感性的第一玉米或胚芽植物的方法;引进玉米或胚乳的植物;赋予新的抗性或对斐济病毒增强抗性的玉米植物的生产方法;通过对真菌的推荐抗性或增加抗性的定量示踪加上选择的至少一棵玉米植物的选择方法。

4. METHOD OF IDENTIFYING A CORN OR GERM PLASM PLANT THAT HAS NEWLY CONFERED RESISTANCE OR INCREASED RESISTANCE TO A FIJIVIRUS SOROGRUP 2 MEMBER, OR SUSCEPTIBILITY TO A FIJIVIRUS SOROGRUPT MEANS A PRODUCT CONCERNED OR INCREASED RESISTANCE TO A FIJIVIRUS SERGROUP 2 MEMBER AND METHOD OF SELECTION AT LEAST ONE CORN PLANT THROUGH SELECTION ASSISTED BY A QUANTITATIVE TRACE LOCATION ASSOCIATED WITH THE RECENTLY RESISTANCE MEMBER FIJIVIRUS SEROGROUP 2 [P] . 外国专利： BRPI0818409B1 . 2018-03-13

机译：鉴定新近被赋予对斐济病毒SOROGRUP 2成员的抗性或耐药性的玉米或胚芽植物的方法，或对斐济病毒SOROGRUPT敏感的产品是指对某种方法或某种方法的抗药性或耐药性有所提高的产品通过与最近抗性成员斐济病毒血清组2关联的定量跟踪位置来选择玉米

5. virus, isolated or recombinant nucleic acid or totv specific fragment thereof, expression vector, polynucleotide, isolated or recombinant polypeptide, antigen, antibody, methods for producing an antibody against a virus, for identifying a viral isolate as a virus, for detecting the presence of a virus in a sample, to identify a plant that is resistant to a virus, and to produce a plant that is resistant to a virus; and, uses of a virus, isolated or recombinant nucleic acid or totv specific fragment of the expression virus, polynucleotide, isolated polypeptide or virus, to identify a viral isolate with virus, to detect the presence of a virus in a sample, to identify a plant that is resistant to a virus, and to produce a plant that is resistant to a virus, and, uses of a virus, and at an attenuated form of a virus [P] . 外国专利： BRPI0812428A2 . 2017-05-02

机译：病毒，分离的或重组的核酸或其总片段，表达载体，多核苷酸，分离的或重组的多肽，抗原，抗体，产生针对病毒的抗体的方法，将病毒分离株鉴定为病毒，检测是否存在病毒样品中的病毒，以鉴定对病毒具有抗性的植物，并产生对病毒具有抗性的植物;以及表达病毒，多核苷酸，分离的多肽或病毒的病毒，分离的或重组的核酸或总片段的用途，用于鉴定带有病毒的病毒分离株，检测样品中病毒的存在，鉴定对病毒具有抗性的植物，并产生对病毒具有抗性的植物，以及病毒的用途以及减毒形式

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De novo transcriptome sequencing in Frankliniella occidentalis to identify genes involved in plant virus transmission and insecticide resistance

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