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首页> 外文期刊>Standards in Genomic Sciences >Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites
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Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites

机译：香茅假单胞菌P3B5的完整基因组序列，该微生物可用于碳氢化合物污染部位的微生物根系修复。

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Pseudomonas citronellolis is a Gram negative, motile gammaproteobacterium belonging to the order Pseudomonadales and the family Pseudomonadaceae . We isolated strain P3B5 from the phyllosphere of basil plants ( Ocimum basilicum L.). Here we describe the physiology of this microorganism, its full genome sequence, and detailed annotation. The 6.95 Mbp genome contains 6071 predicted protein coding sequences and 96 RNA coding sequences. P. citronellolis has been the subject of many studies including the investigation of long-chain aliphatic compounds and terpene degradation. Plant leaves are covered by long-chain aliphates making up a waxy layer that is associated with the leaf cuticle. In addition, basil leaves are known to contain high amounts of terpenoid substances, hinting to a potential nutrient niche that might be exploited by P. citronellolis . Furthermore, the isolated strain exhibited resistance to several antibiotics. To evaluate the potential of this strain as source of transferable antibiotic resistance genes on raw consumed herbs we therefore investigated if those resistances are encoded on mobile genetic elements. The availability of the genome will be helpful for comparative genomics of the phylogenetically broad pseudomonads, in particular with the sequence of the P. citronellolis type strain PRJDB205 not yet publicly available. The genome is discussed with respect to a phyllosphere related lifestyle, aliphate and terpenoid degradation, and antibiotic resistance.
机译：香茅假单胞菌（Pseudomonas citronellolis）是革兰氏阴性的能动丙种变形杆菌，属于假单胞菌科（Pseudomonadaceae）。我们从罗勒植物（Ocimum basilicum L.）的根际分离了菌株P3B5。在这里，我们描述了这种微生物的生理学，其完整的基因组序列以及详细的注释。 6.95 Mbp的基因组包含6071个预测的蛋白质编码序列和96个RNA编码序列。香茅体育已成为许多研究的主题，包括对长链脂族化合物和萜烯降解的研究。植物的叶子被长链脂肪烃覆盖，构成了与叶子角质层相关的蜡质层。此外，已知罗勒叶含有大量的萜类物质，这暗示了香茅体育可能利用的潜在营养位。此外，分离的菌株表现出对几种抗生素的抗性。因此，为了评估该菌株作为原始食用草药上可转移的抗生素抗性基因来源的潜力，我们因此调查了这些抗性是否在移动遗传元件上编码。基因组的可获得性将有助于系统发育上较宽的假单胞菌的比较基因组学，特别是对于尚未公开获得的香茅毕赤酵母型菌株PRJDB205的序列。讨论了与叶圈相关的生活方式，脂族和萜类化合物降解以及抗生素抗性相关的基因组。

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