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首页> 外文期刊>Standards in Genomic Sciences >Draft genome sequence of Lampropedia cohaerens strain CT6 T isolated from arsenic rich microbial mats of a Himalayan hot water spring
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Draft genome sequence of Lampropedia cohaerens strain CT6 T isolated from arsenic rich microbial mats of a Himalayan hot water spring

机译：从喜马拉雅温泉水的富含砷的微生物垫中分离到的南美足纲虾CT6 T基因组序列草案

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Lampropedia cohaerens strain CT6supT/sup, a non-motile, aerobic and coccoid strain was isolated from arsenic rich microbial mats (temperature ~45?°C) of a hot water spring located atop the Himalayan ranges at Manikaran, India. The present study reports the first genome sequence of type strain CT6supT/sup of genus Lampropedia cohaerens . Sequencing data was generated using the Illumina HiSeq 2000 platform and assembled with ABySS v 1.3.5. The 3,158,922?bp genome was assembled into 41 contigs with a mean GC content of 63.5?% and 2823 coding sequences. Strain CT6supT/sup was found to harbour genes involved in both the Entner-Duodoroff pathway and non-phosphorylated ED pathway. Strain CT6supT/sup also contained genes responsible for imparting resistance to arsenic, copper, cobalt, zinc, cadmium and magnesium, providing survival advantages at a thermal location. Additionally, the presence of genes associated with biofilm formation, pyrroloquinoline-quinone production, isoquinoline degradation and mineral phosphate solubilisation in the genome demonstrate the diverse genetic potential for survival at stressed niches.
机译：Lampropedia cohaerens菌株CT6 T 是一种非运动，需氧和球菌菌株，是从位于Manikaran喜马拉雅山脉顶上的热水泉中富含砷的微生物垫（温度约45°C）分离的。印度。本研究报道了南美白眼线虫属CT6 T 型菌株的第一个基因组序列。测序数据是使用Illumina HiSeq 2000平台生成的，并与ABySS v 1.3.5组装在一起。 3,158,922？bp基因组被组装成41个重叠群，平均GC含量为63.5％，编码序列为2823个。发现菌株CT6 T 包含参与Entner-Duodoroff途径和非磷酸化ED途径的基因。菌株CT6 T 还包含负责赋予砷，铜，钴，锌，镉和镁抗性的基因，在热环境中具有生存优势。另外，基因组中与生物膜形成，吡咯并喹啉-醌产生，异喹啉降解和矿物磷酸盐溶解相关的基因的存在证明了在应激环境中存活的多样性遗传潜力。

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