• 主题
高级搜索  >
历史搜索 清空历史
首页> 外文期刊>Database >Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs
【24h】

Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs

机译：Zompo博士：Zostera滨海和Posidonia oceanica EST的在线数据存储库

获取原文
           
页面导航
  • 摘要
  • 著录项
  • 相似文献
  • 相关主题

摘要

As ecosystem engineers, seagrasses are angiosperms of paramount ecological importance in shallow shoreline habitats around the globe. Furthermore, the ancestors of independent seagrass lineages have secondarily returned into the sea in separate, independent evolutionary events. Thus, understanding the molecular adaptation of this clade not only makes significant contributions to the field of ecology, but also to principles of parallel evolution as well. With the use of Dr. Zompo, the first interactive seagrass sequence database presented here, new insights into the molecular adaptation of marine environments can be inferred. The database is based on a total of 14 597 ESTs obtained from two seagrass species, Zostera marina and Posidonia oceanica, which have been processed, assembled and comprehensively annotated. Dr. Zompo provides experimentalists with a broad foundation to build experiments and consider challenges associated with the investigation of this class of non-domesticated monocotyledon systems. Our database, based on the Ruby on Rails framework, is rich in features including the retrieval of experimentally determined heat-responsive transcripts, mining for molecular markers (SSRs and SNPs), and weighted key word searches that allow access to annotation gathered on several levels including Pfam domains, GeneOntology and KEGG pathways. Well established plant genome sites such as The Arabidopsis Information Resource (TAIR) and the Rice Genome Annotation Project are interfaced by Dr. Zompo. With this project, we have initialized a valuable resource for plant biologists in general and the seagrass community in particular. The database is expected to grow together with more data to come in the near future, particularly with the recent initiation of the Zostera genome sequencing project. The Dr. Zompo database is available at http://drzompo.uni-muenster.de/
机译：作为生态系统工程师，海草是在全球浅水海岸线栖息地中至关重要的被子植物。此外，独立海草谱系的祖先在单独的独立进化事件中第二次返回海中。因此，了解该进化枝的分子适应性不仅对生态学领域做出了重大贡献，而且对平行进化原理也做出了重要贡献。通过使用此处介绍的第一个交互式海草序列数据库Zompo博士，可以推断出对海洋环境的分子适应性的新见解。该数据库基于从两个海草物种（海带虾（Zostera marina）和大洋波塞冬（Posidonia oceanica））获得的总共14 597个EST，这些EST已经过加工，组装和全面注释。 Zompo博士为实验人员提供了广泛的基础，可用于建立实验并考虑与此类非驯化单子叶植物系统调查相关的挑战。我们基于Ruby on Rails框架的数据库具有丰富的功能，包括检索实验确定的热响应转录本，挖掘分子标记（SSR和SNP）以及加权关键词搜索，从而可以访问在多个级别收集的注释包括Pfam域，GeneOntology和KEGG途径。完善的植物基因组位点，例如拟南芥信息资源（TAIR）和水稻基因组注释项目，由Zompo博士进行了接口。通过这个项目，我们为植物生物学家，尤其是海草群落，建立了宝贵的资源。预计该数据库将在不久的将来与更多数据一起增长，尤其是随着最近启动的Zostera基因组测序项目的到来。 Dr. Zompo数据库可从http://drzompo.uni-muenster.de/获得。

著录项

相似文献

  • 外文文献
  • 专利
获取原文

客服邮箱：kefu@zhangqiaokeyan.com

京公网安备：11010802029741号 ICP备案号：京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有

  • 客服微信

  • 服务号