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The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation

机译：斑马鱼GenomeWiki：一种将长尾巴连接起来以进行斑马鱼基因注释的众包方法

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摘要

A large repertoire of gene-centric data has been generated in the field of zebrafish biology. Although the bulk of these data are available in the public domain, most of them are not readily accessible or available in nonstandard formats. One major challenge is to unify and integrate these widely scattered data sources. We tested the hypothesis that active community participation could be a viable option to address this challenge. We present here our approach to create standards for assimilation and sharing of information and a system of open standards for database intercommunication. We have attempted to address this challenge by creating a community-centric solution for zebrafish gene annotation. The Zebrafish GenomeWiki is a ‘wiki'-based resource, which aims to provide an altruistic shared environment for collective annotation of the zebrafish genes. The Zebrafish GenomeWiki has features that enable users to comment, annotate, edit and rate this gene-centric information. The credits for contributions can be tracked through a transparent microattribution system. In contrast to other wikis, the Zebrafish GenomeWiki is a ‘structured wiki' or rather a ‘semantic wiki'. The Zebrafish GenomeWiki implements a semantically linked data structure, which in the future would be amenable to semantic search. Database URL: http://genome.igib.res.in/twiki
机译：在斑马鱼生物学领域中已经产生了大量以基因为中心的数据。尽管这些数据中的大部分都可以在公共领域获得，但是大多数都不容易获得或以非标准格式获得。一项主要挑战是统一和集成这些分散的数据源。我们检验了以下假设：积极的社区参与可能是应对这一挑战的可行选择。我们在这里介绍我们的方法，以创建用于信息吸收和共享的标准以及用于数据库互通的开放标准系统。我们试图通过为斑马鱼基因注释创建以社区为中心的解决方案来应对这一挑战。斑马鱼GenomeWiki是基于Wiki的资源，旨在为斑马鱼基因的集体注释提供一个利他的共享环境。 Zebrafish GenomeWiki具有使用户能够注释，注释，编辑和评价以基因为中心的信息的功能。可以通过透明的微观归因系统跟踪贡献额。与其他Wiki相比，Zebrafish GenomeWiki是“结构化Wiki”或“语义Wiki”。 Zebrafish GenomeWiki实现了语义链接的数据结构，将来该结构将适用于语义搜索。数据库URL：http://genome.igib.res.in/twiki

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