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首页> 外文期刊>Journal of computational biology >Node Fingerprinting: An Efficient Heuristic for Aligning Biological Networks
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Node Fingerprinting: An Efficient Heuristic for Aligning Biological Networks

机译:节点指纹:一种有效的启发式方法,用于调整生物网络

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Abstract With the continuing increase in availability of biological data and improvements to biological models, biological network analysis has become a promising area of research. An emerging technique for the analysis of biological networks is through network alignment. Network alignment has been used to calculate genetic distance, similarities between regulatory structures, and the effect of external forces on gene expression, and to depict conditional activity of expression modules in cancer. Network alignment is algorithmically complex, and therefore we must rely on heuristics, ideally as efficient and accurate as possible. The majority of current techniques for network alignment rely on precomputed information, such as with protein sequence alignment, or on tunable network alignment parameters, which may introduce an increased computational overhead. Our presented algorithm, which we call Node Fingerprinting (NF), is appropriate for performing global pairwise network alignment without precomputation..." /> rel="meta" type="application/atom+xml" href="http://dx.doi.org/10.1089%2Fcmb.2014.0114" /> rel="meta" type="application/rdf+json" href="http://dx.doi.org/10.1089%2Fcmb.2014.0114" /> rel="meta" type="application/unixref+xml" href="http://dx.doi.org/10.1089%2Fcmb.2014.0114" /> 展开▼
机译:摘要随着生物数据可用性的不断提高和生物模型的改进,生物网络分析已成为一个有前途的研究领域。用于分析生物网络的一种新兴技术是通过网络对齐。网络比对已用于计算遗传距离,调控结构之间的相似性以及外力对基因表达的影响,并描述癌症中表达模块的条件活性。网络对齐在算法上很复杂,因此我们必须依靠启发式算法,最好是尽可能高效和准确。当前用于网络比对的大多数技术依赖于预先计算的信息,例如蛋白质序列比对,或依赖于可调节的网络比对参数,这可能会增加计算开销。我们提出的算法,我们称为节点指纹(Node Fingerprinting,NF),适用于执行不预先计算的全局成对网络对齐。“” <元名称=” dc.Date“ scheme =” WTN8601“ content =” 2014-09-23“ /> <元名称=” dc.Type“ content =” research -article“ /> rel =” meta“ type =” application / atom + xml“ href =” http://dx.doi.org/ 10.1089%2Fc mb.2014.0114“ /> rel =” meta“ type =” application / rdf + json“ href =” http://dx.doi.org/10.1089%2Fcmb.2014.0114“ /> rel =” meta“ type =“ application / unixref + xml” href =“ http://dx.doi.org/10.1089%2Fcmb.2014.0114” /> <元名称=“ MSSmartTagsPreventParsing” content =“ true

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