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Decoding and analysis of organelle genomes of Indian tea (Camellia assamica) for phylogenetic confirmation

机译：印度茶（Camellia Assamica）的细胞石基因组对系统发育鉴定的解码与分析

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The NCBI database has 15 chloroplast (cp) genome sequences available for different Camellia species but none for C. assamica. There is no report of any mitochondrial (mt) genome in the Camellia genus or Theaceae family. With the strong believes that these organelle genomes can play a great tool for taxonomic and phylogenetic analysis, we successfully assembled and analyzed cp and mt genome of C. assamica. We assembled the complete mt genome of C. assamica in a single circular contig of 707,441?bp length comprising of a total of 66 annotated genes, including 35 protein-coding genes, 29 tRNAs and two rRNAs. The first ever cp genome of C. assamica resulted in a circular contig of 157,353?bp length with a typical quadripartite structure. Phylogenetic analysis based on these organelle genomes showed that C. assamica was closely related to C. sinensis and C. leptophylla. It also supports Caryophyllales as Superasterids.
机译：NCBI数据库有> 15种叶绿体（CP）基因组序列可用于不同的山茶花物种，但无需C. Assamica。在山茶花属或Theaceae家族中没有任何线粒体（MT）基因组的报告。凭借强烈认为，这些细胞石基因组可以为分类和系统发育分析发挥重要工具，我们成功地组装和分析了C.Sassamica的CP和MT基因组。我们在单个圆形CONTIG中组装了C. Assamica的完整MT基因组，其中包含总共66个注释基因，其中包括35个蛋白质编码基因，29个TrNA和两个RRNA。 C. assamica的第一个CP基因组导致圆形CONTIG为157,353磅长度，具有典型的Quadriparte结构。基于这些细胞石基因组的系统发育分析表明，C. Assamica与C. Sinensis和C. leptophylla密切相关。它还支持Caryophyllales作为超速器。

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