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The transcriptome analysis of the whole-body of the gastropod mollusk Limax flavus and screening of putative antimicrobial peptide and protein genes

机译:胃肠杆菌Mollusk Limax柔软糖尿病患者的全身转录组分析及推定抗微生物肽和蛋白质基因的筛选

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The gastropod mollusk Limax flavus, one of the most widespread pests in China, is used to treat infectious diseases in traditional Chinese medicine. However, little genomic information is available for this non-model species. In this study, the whole-body transcriptome of L. flavus was sequenced using next generation sequencing technology. A total of 6.81 Gb clean reads were obtained, which were assembled into 150,766 transcripts with 132,206 annotated unigenes. Functionally classification assigned 30,542 unigenes to 56 Gene Ontology terms, 16,745 unigenes were divided into 26 euKaryotic Ortholog Groups of proteins categories, and 13,854 unigenes were assigned to 230 Kyoto Encyclopedia of Genes and Genomes pathways. Furthermore, we identified 17,251 simple sequence repeats and several kinds of antimicrobial peptide and protein (AMPs) genes. The transcriptome data of L. flavus will provide a valuable genomic resource for further studies on this species, and the AMPs identified in L. flavus will support its medical potential.
机译:Gastropod Mollusk Limax Flavus是中国最普遍的害虫之一,用于治疗中药中的传染病。但是,这种非模型物种可用的基因组信息很少。在该研究中,使用下一代测序技术测序L.FlaVus的全身转录组。获得总共6.81GB清洁读数,将其组装成150,766个转录物,其中132,206个注释的unigenes。功能分类分配到56个基因本体论术语的30,542个未成年人,将16,745个unigenes分为26种蛋白质类别,分配13,854个unigenes,分配给230 kyoto的基因和基因组途径。此外,我们确定了17,251个简单的序列重复和几种抗微生物肽和蛋白质(AMPS)基因。 L.FlaVus的转录组数据将为进一步研究该物种提供有价值的基因组资源,并且L.Flavus中鉴定的AMP将支持其医疗潜力。

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