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首页> 外文期刊>Journal of Bioinformatics and Computational Biology >ANVAYA: A WORKFLOWS ENVIRONMENT FOR AUTOMATED GENOME ANALYSIS
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ANVAYA: A WORKFLOWS ENVIRONMENT FOR AUTOMATED GENOME ANALYSIS

机译：ANVAYA：用于自动基因组分析的工作流环境

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摘要

Anvaya is a workflow environment for automated genome analysis that provides an interface for several bioinformatics tools and databases, loosely coupled together in a coordinated system, enabling the execution of a set of analyses tools in series or in parallel. It is a client-server workflow environment that has an advantage over existing software as it enables extensive pre & post processing of biological data in an efficient manner. "Anvaya" offers the user, novel functionalities to carry out exhaustive comparative analysis via "custom tools," which are tools with new functionality not available in standard tools, and "built-in PERL parsers," which automate data-flow between tools that hitherto, required manual intervention. It also provides a set of 11 pre-defined workflows for frequently used pipelines in genome annotation and comparative genomics ranging from EST assembly and annotation to phylogenetic reconstruction and microarray analysis. It providesa platform that serves as a single-stop solution for biologists to carry out hassle-free and comprehensive analysis, without being bothered about the nuances involved in tool installation, command line parameters, format conversions required to connect tools and manage/process multiple data sets at a single instance.
机译：Anvaya是一种用于自动化基因组分析的工作流环境，它为几种生物信息学工具和数据库提供了一个接口，这些接口在协调的系统中松散地耦合在一起，从而可以串行或并行地执行一组分析工具。它是一种客户端-服务器工作流环境，具有优于现有软件的优势，因为它可以高效地对生物数据进行广泛的前后处理。 “ Anvaya”通过“自定义工具”为用户提供新颖的功能，以进行详尽的比较分析，“自定义工具”是具有标准工具中不提供的新功能的工具，而“内置PERL解析器”则可自动进行工具之间的数据流迄今为止，需要人工干预。它还为基因组注释和比较基因组学中常用的管线提供了11个预定义的工作流，范围从EST组装和注释到系统发育重建和微阵列分析。它提供了一个平台，可作为生物学家的一站式解决方案，进行轻松，全面的分析，而不必担心工具安装，命令行参数，连接工具以及管理/处理多个数据所需的格式转换所涉及的细微差别在单个实例上设置。

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