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Origin of avian genome size and structure in non-avian dinosaurs

机译:非禽类恐龙鸟类基因组大小和结构的起源

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Avian genomes are small and streamlined compared with those of other amniotes by virtue of having fewer repetitive elements and less non-coding DNA. This condition has been suggested to represent a key adaptation for flight in birds, by reducing the metabolic costs associated with having large genome and cell sizes. However, the evolution of genome architecture in birds, or any other lineage, is difficult to study because genomic information is often absent for long-extinct relatives. Here we use a novel bayesian comparative method to show that bone-cell size correlates well with genome size in extant vertebrates, and hence use this relationship to estimate the genome sizes of 31 species of extinct dinosaur, including several species of extinct birds. Our results indicate that the small genomes typically associated with avian flight evolved in the saurischian dinosaur lineage between 230 and 250 million years ago, long before this lineage gave rise to the first birds. By comparison, ornithischian dinosaurs are inferred to have had much larger genomes, which were probably typical for ancestral Dinosauria. Using comparative genomic data, we estimate that genome-wide interspersed mobile elements, a class of repetitive DNA, comprised 5-12% of the total genome size in the saurischian dinosaur lineage, but was 7-19% of total genome size in ornithischian dinosaurs, suggesting that repetitive elements became less active in the saurischian lineage. These genomic characteristics should be added to the list of attributes previously considered avian but now thought to have arisen in non-avian dinosaurs, such as feathers, pulmonary innovations6, and parental care and nesting.
机译:与其他羊膜动物相比,禽类基因组小而精简,其重复元件更少,非编码DNA更少。通过减少与具有大的基因组和细胞大小相关的代谢成本,已经提出该条件代表了禽类飞行的关键适应。但是,由于长期灭绝的亲戚经常缺少基因组信息,因此很难研究鸟类或任何其他谱系中基因组结构的演变。在这里,我们使用一种新颖的贝叶斯比较方法来显示骨骼细胞的大小与现存脊椎动物的基因组大小具有很好的相关性,因此,使用这种关系来估计31种灭绝恐龙的基因组大小,其中包括几种灭绝鸟类。我们的研究结果表明,通常与禽类飞行有关的小基因组是在绍里斯基恐龙世系之间演化的,大约在230到2.5亿年前,而在该世系产生第一批鸟类之前很久。相比之下,推测鸟眼恐龙具有更大的基因组,这可能是祖先恐龙的典型基因组。使用比较的基因组数据,我们估计全基因组散布的移动元件(一类重复性DNA)占saurischian恐龙世系中总基因组大小的5-12%,但占ornithischian恐龙中总基因组大小的7-19% ,表明重复元素在saurischian世系中的活跃度降低。这些基因组特征应添加到以前被认为是禽类但现在被认为是非禽类恐龙中出现的属性列表中,例如羽毛,肺部革新6,以及父母关怀和筑巢。

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