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首页> 外文期刊>The journal of physical chemistry, B. Condensed matter, materials, surfaces, interfaces & biophysical >Structure of the Amide I Band of Peptides Measured by Femtosecond Nonlinear-Infrared Spectroscopy
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Structure of the Amide I Band of Peptides Measured by Femtosecond Nonlinear-Infrared Spectroscopy

机译:飞秒非线性红外光谱法测肽的酰胺I带结构

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Femtosecond infrared (IR) pump probe and dynamic hole burning experiments were used to examine the ultrafast response of the modes in the 1600-1700 cm~(-1) region (the so-called amide I modes) of N-methylacetamide (NMA) and three small globular peptides, apamin, scyllatoxin, and bovine pancreatic trypsin inhibitor (BPTI). A value of 16 cm~(-1) was found for the anharmonicity of the amide I vibration. Vibrational relaxation of the amide I modes of all investigated peptides occurs in ca. 1.2 ps. An even faster value of 450 fs is obtained for NMA, a model for the peptide unit. The vibrational relaxation is dominated by intramolecular energy redistribution (IVR) and reflects an intrinsic property of the peptide group in any environment. Dynamic hole burning experiments with a narrow band pump pulse which selectively excites only a subset of the amide I eigenstates reveal that energy migration between different amide I states is slow compared with vibrational relaxation. Two-dimensional pump-probe (2D-IR) spectra that display the spectral response of the amide I band as a function of the frequency of the narrow band pump pulse show that the amide I states are nevertheless delocalized along the peptide backbone. A simple excitonic coupling model describes the nonlinear pump-probe spectrum, and it reproduces the experimental 2D-IR spectra. It is estimated that the accessible peptide excitons are delocalized over a length of ca. 8 A.
机译:飞秒红外(IR)泵探针和动态孔燃烧实验用于检查N-甲基乙酰胺(NMA)在1600-1700 cm〜(-1)区域内的模式(所谓的酰胺I模式)的超快响应以及三种小球状肽,阿帕明,西拉托辛和牛胰胰蛋白酶抑制剂(BPTI)。发现酰胺I振动的非谐性为16cm〜(-1)。所有研究的肽的酰胺I模式的振动弛豫发生在大约3年内。 1.2 ps。对于NMA(肽单元的模型),可获得更快的450 fs值。振动弛豫主要受分子内能量重新分布(IVR)的影响,反映了肽基团在任何环境中的固有特性。使用窄带泵浦脉冲进行动态空穴燃烧实验,该脉冲仅选择性地激发一部分酰胺I本征态,这表明与振动弛豫相比,不同酰胺I本征态之间的能量迁移缓慢。二维泵浦探针(2D-IR)光谱显示了酰胺I谱带的光谱响应随窄带泵浦脉冲频率的变化,表明酰胺I态仍然沿肽主链离域。一个简单的激子耦合模型描述了非线性泵浦-探针谱,并再现了实验2D-IR谱。据估计,易接近的肽激子在大约1000μm的长度上是离域的。 8A。

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