Genome-wide analysis of gene expression of EMS-induced short fiber mutant Ligon lintless-y (li(y)) in cotton (Gossypium hirsutum L.)

Naoumkina Marina; Bechere Efrem; Fang David D.; Thyssen Gregory N.; Florane Christopher B.

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Genome-wide analysis of gene expression of EMS-induced short fiber mutant Ligon lintless-y (li(y)) in cotton (Gossypium hirsutum L.)

机译：棉花（Gossypium hirsutum L.）中EMS诱导的短纤维突变体Ligon-Y（Li（Y））的基因组宽分析

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In this work we describe a chemically-induced short fibermutant cotton line, Ligon-lintless-y (li(y)), which is controlled by a single recessive locus and affects multiple traits, including height of the plant, and length and maturity of fiber. An RNAseq analysis was used to evaluate global transcriptional changes during cotton fiber development at 3, 8 and 16 days post anthesis. We found that 613, 2629 and 3397 genes were significantly down-regulated, while 2700, 477 and 3260 were significantly up-regulated in liy at 3, 8 and 16 DPA. Gene set enrichment analysis revealed that many metabolic pathways, including carbohydrate, cell wall, hormone metabolism and transport were substantially altered in liy developing fibers. We discuss perturbed expression of genes involved in signal transduction and biosynthesis of phytohormones, such as auxin, abscisic acid, gibberellin and ethylene. The results of this study provide new insights into transcriptional regulation of cotton fiber development. Published by Elsevier Inc.

机译：在这项工作中，我们描述了一种化学诱导的短纤维棉线，Ligon-lintless-y（Li（Y）），其由单个隐性轨迹控制并影响多种性状，包括植物的高度，以及长度和成熟度纤维。 RNASEQ分析用于在3,8和16天后的棉纤维发育过程中评估全局转录变化。我们发现，613,2629和3397个基因显着下调，而2700,477和3260在Liy在3,8和16dPa下显着上调。基因设定富集分析显示，在Liy发育纤维中，许多代谢途径，包括碳水化合物，细胞壁，激素代谢和转运基本上改变。我们讨论植物转导和植物激素的生物合成中涉及的基因的扰动表达，例如养肝剂，脱落酸，赤霉素和乙烯。本研究的结果为棉纤维开发的转录调节提供了新的见解。 elsevier公司发布

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《Genomics》 |2017年第4期|共10页
作者
Naoumkina Marina; Bechere Efrem; Fang David D.; Thyssen Gregory N.; Florane Christopher B.;
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作者单位

ARS Cotton Fiber Biosci Res Unit USDA SRRC 1100 Robert E Lee Blvd New Orleans LA 70124 USA;

ARS Crop Genet Res Unit USDA 141 Expt Stn Rd Stoneville MS 38776 USA;

ARS Cotton Fiber Biosci Res Unit USDA SRRC 1100 Robert E Lee Blvd New Orleans LA 70124 USA;

ARS Cotton Fiber Biosci Res Unit USDA SRRC 1100 Robert E Lee Blvd New Orleans LA 70124 USA;

ARS Cotton Fiber Biosci Res Unit USDA SRRC 1100 Robert E Lee Blvd New Orleans LA 70124 USA;

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原文格式 PDF
正文语种 eng
中图分类医学遗传学;
关键词
Cotton; Fiber; Elongation; RNAseq; li(y) Mutation;

机译：棉;纤维;伸长;rnaseq;li（y）突变;

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专利

1. Irrigation's effect and applied selection on the fiber quality of Ethyl MethaneSulfonate (EMS) treated upland cotton (Gossypium hirsutum L.) [J] . WITT Travis W., ULLOA Mauricio, PELLETIER Mathew G., 棉花研究（英文版） . 2019,第004期
2. Irrigation's effect and applied selection on the fiber quality of Ethyl MethaneSulfonate (EMS) treated upland cotton (Gossypium hirsutum L.) [J] . WITT Travis W., ULLOA Mauricio, PELLETIER Mathew G., 棉花研究（英文版） . 2018,第004期
3. Irrigation’s effect and applied selection on the fiber quality of Ethyl MethaneSulfonate(EMS)treated upland cotton(Gossypium hirsutum L.) [J] . WITT Travis W, ULLOA Mauricio, PELLETIER Mathew G., 棉花研究（英文） . 2018,第004期
4. Effects of Irrigation Water Quality and Drip Tape Arrangement on Soil Salinity, Soil Moisture Distribution, and Cotton Yield （Gossypium hirsutum L.） Under Mulched Drip Irrigation in Xinjiang, China [J] . LIU Mei-xian, YANG Jing-song, LI Xiao-ming, 农业科学学报：英文版 . 2012,第003期
5. Effects of Irrigation Water Quality and Drip Tape Arrangement on Soil Salinity, Soil Moisture Distribution, and Cotton Yield (Gossypium hirsutum L.) Under Mulched Drip Irrigation in Xinjiang, China [J] . LIU Mei-xian, YANG Jing-song, LI Xiao-ming, 农业科学学报（英文版） . 2012,第003期
6. Genome-wide analysis of gene expression of EMS-induced short fiber mutant Ligon lintless-y (liy) in cotton (Gossypium hirsutum L.) [J] . MarinaNaoumkina, EfremBechere, David D.Fang, Genomics . 2017,第3a4期

机译：全基因组分析EMS诱导的棉花短纤维突变体Ligon lintless-y（liy）基因表达的全基因组（棉花）
7. RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li 1 ) and – 2 (Li 2 ) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation [J] . Marina Naoumkina, Gregory N Thyssen, David D Fang BMC Plant Biology . 2015,第1期

机译：短纤维突变体Ligon-lintless-1（Li 1）和–2（Li 2）的RNA序列分析显示了水通道蛋白在棉花（陆地棉）纤维伸长中的重要作用。
8. Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li 1 ) [J] . Matthew K Gilbert, Rickie B Turley, Hee J Kim, BMC Genomics . 2013,第1期

机译：短棉（Gossypium hirsutum L.）纤维突变体Ligon lintless-1（Li 1）的芯片谱分析和标记分析
9. Efficacy of genetically modified and conventional baculoviruses for control of bollworm (Helicoverpa zea) (Boddie) in B.T. and conventional non-B.T. cotton (Gossypium hirsutum) (L.) [C] . A. D. Turner, S. G. Turnipseed, M. J. Sullivan Beltwide Cotton Conferences . 2000

机译：基因改性和常规杆状病毒治疗Bollworm（Helicoverpa Zea）（Boddie）的疗效。和传统的非B.T。棉花（Gossypium hirsutum）（L.）
10. Molecular studies on fiber initiation genes in cotton (Gossypium hirsutum L.) [D] . Hassan, Osama Saad Sayed 2002

机译：棉花纤维起始基因的分子研究
11. Comparative Transcriptome Analysis of Short Fiber Mutants Ligon-Lintless 1 And 2 Reveals Common Mechanisms Pertinent to Fiber Elongation in Cotton (Gossypium hirsutum L.) [O] . Matthew K. Gilbert, Hee Jin Kim, Yuhong Tang, -1

机译：短纤维突变体Ligon-Lintless 1和2的比较转录组分析揭示了棉（Gossypium hirsutum L.）纤维伸长相关的常见机制。
12. RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li1) and – 2 (Li2) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation [O] . Marina Naoumkina, Gregory N Thyssen, David D Fang 2015

机译：短纤维突变体Ligon-lintless-1（Li1）和–2（Li2）的RNA-seq分析揭示了水通道蛋白在棉花（Gossypium hirsutum L.）纤维伸长中的重要作用。

Genome-wide analysis of gene expression of EMS-induced short fiber mutant Ligon lintless-y (li(y)) in cotton (Gossypium hirsutum L.)

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