Detection of exon location in eukaryotic DNA using a fuzzy adaptive Gabor wavelet transform

Das Lopamudra; Das J. K.; Nanda Sarita

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Detection of exon location in eukaryotic DNA using a fuzzy adaptive Gabor wavelet transform

机译：使用模糊自适应巨型小波变换检测真核DNA中的外显子位置

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摘要

The existing model-independent methods for the detection of exons in DNA could not prove to be ideal as commonly employed fixed window length strategy produces spectral leakage causing signal noise The Modified-Gabor-wavelet-transform exploits a multiscale strategy to deal with the issue to some extent. Yet, no rule regarding the occurrence of small and large exons has been specified. To overcome this randomness, scaling-factor of GWT has been adapted based on a fuzzy rule. Due to the nucleotides' genetic code and fuzzy behaviors in DNA configuration, this work could adopt the fuzzy approach. Two fuzzy membership functions (large and small) take care of the variation in the coding regions. The fuzzy-based learning parameter adaptively tunes the scale factor for fast and precise prediction of exons. The proposed approach has an immense plus point of being capable of isolating detailed sub-regions in each exon efficiently proving its efficacy comparing with existing techniques.

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来源
《Genomics》 |2020年第6期|共11页
作者
Das Lopamudra; Das J. K.; Nanda Sarita;
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作者单位

KIIT Univ Sch Elect Engn Bhubaneswar India;

KIIT Univ Sch Elect Engn Bhubaneswar India;

KIIT Univ Sch Elect Engn Bhubaneswar India;

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原文格式 PDF
正文语种 eng
中图分类医学遗传学;
关键词
DNA; Gabor-wavelet transform; Fuzzy rule; Exon; Time-frequency analysis;

机译：DNA;Gabor-小波变换;模糊规则;外显子;时频分析;

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5. Detection of exon location in eukaryotic DNA using a fuzzy adaptive Gabor wavelet transform [J] . Lopamudra Das, J.K. Das, Sarita Nanda Genomics . 2020,第6期

机译：使用模糊自适应Gabor小波变换检测真核DNA中的外显子位置
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Detection of exon location in eukaryotic DNA using a fuzzy adaptive Gabor wavelet transform

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