First de novo transcriptome assembly of Iwagaki oyster, Crassostrea nippona, and comparative evolutionary analysis of salinity-stress response genes in Crassostrea oysters

Gong Jianwen; Li Qi; Yu Hong; Liu Shikai; Kong Lingfeng

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First de novo transcriptome assembly of Iwagaki oyster, Crassostrea nippona, and comparative evolutionary analysis of salinity-stress response genes in Crassostrea oysters

机译：第一德诺科省Iwagaki Oyster，Crassostrea Nippona的转录组合组大会和Crassostrea Oysters的盐度应激反应基因的比较进化分析

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摘要

Crassostrea nippona is a commercially important oyster species in East Asia for it is edible during the summer when the other oyster species are unavailable. Salinity is one of the important limiting factors to the survival and distribution of this stenohaline species. In this study, 535 million reads (74G data) from C. nippona were produced and assembled into 66,742 transcripts. The number of 19,253 differentially expressed genes (DEGs) under salinity stress were identified as salinity stress-response genes. Through comparative evolutionary analysis in five Crassostrea species from East Asia, salinity stress-response genes were noticed to have higher adaptive evolution rates than other genes. This study presents the first de novo transcriptome of C. nippona. Furthermore, comparative evolutionary analysis implies that salinity plays an important role in speciation of Crassostrea species.

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来源
《Marine genomics》 |2021年第1期|共5页
作者
Gong Jianwen; Li Qi; Yu Hong; Liu Shikai; Kong Lingfeng;
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作者单位

Ocean Univ China Key Lab Mariculture Minist Educ Qingdao 266003 Peoples R China;

Ocean Univ China Key Lab Mariculture Minist Educ Qingdao 266003 Peoples R China;

Ocean Univ China Key Lab Mariculture Minist Educ Qingdao 266003 Peoples R China;

Ocean Univ China Key Lab Mariculture Minist Educ Qingdao 266003 Peoples R China;

Ocean Univ China Key Lab Mariculture Minist Educ Qingdao 266003 Peoples R China;

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原文格式 PDF
正文语种 eng
中图分类遗传学;
关键词
Comparative transcriptome; Salinity; Crassostrea; Adaptive evolution;

机译：比较转录组;盐度;鲫鱼;自适应演化;

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外文文献
专利

1. Validation of Housekeeping Genes for Gene Expression Analysis in Iwagaki Oyster (Crassostrea nippona) Under Salinity Stress by Quantitative Real-Time PCR [J] . GONG Jianwen, LI Qi, YU Hong, 中国海洋大学学报（英文版） . 2020,第006期
2. Multiplex PCR Sets of Novel Microsatellite Loci for Iwagaki Oyster Crassostrea nippona and Their Application in Parentage Assignment [J] . LIU Kaikai, LI Qi, LI Qiongzhen 中国海洋大学学报（英文版） . 2020,第001期
3. Effects of Salinity and Temperature on Growth and Survival of Juvenile Iwagaki Oyster Crassostrea nippona [J] . WANG Tao, LI Qi 中国海洋大学学报（英文版） . 2018,第004期
4. Characterization of reference genes for qPCR analysis in various tissues of the Fujian oyster Crassostrea angulata [J] . PU Fei, YANG Bingye, KE Caihuan 中国海洋湖沼学报（英文版） . 2015,第004期
5. Iodothyronine deiodinase gene analysis of the Pacific oyster Crassostrea gigas reveals possible conservation of thyroid hormone feedback regulation mechanism in mollusks [J] . HUANG Wen, XU Fei, QU Tao, 中国海洋湖沼学报（英文版） . 2015,第004期
6. Development and characterization of 108 SNP markers in the Iwagaki oyster, Crassostrea nippona [J] . Liu Kaikai, Yu Hong, Li Qi Conservation Genetics Resources . 2019,第4期

机译：Iwagaki Oyster，Crassostrea Nippona的108个SNP标记的开发与特征
7. Effects of salinity, stocking density, and algal density on growth and survival of Iwagaki oyster Crassostrea nippona larvae [J] . Wang Tao, Li Qi, Zhang Jingxiao, Aquaculture International . 2018,第4期

机译：盐度，放养密度和藻类密度对Iwagaki Oyster Crassostrea Nippona幼虫生长和生存的影响
8. Effects of salinity, stocking density, and algal density on growth and survival of Iwagaki oyster Crassostrea nippona larvae [J] . Wang Tao, Li Qi, Zhang Jingxiao, Aquaculture International . 2018,第4期

机译：盐度，放养密度和藻类密度对Iwagaki Oyster Crassostrea Nippona幼虫生长和生存的影响
9. MOLECULAR CHARACTERISATION OF AN IMMUNE RELATED GENE, CGBPI/LBP ISOLATED FROM THE OYSTER CRASSOSTREA GIGAS [C] . M. Gonzalez, Y. Gueguen, J. Fievet, International Conference of the European Aquaculture Society . 2004

机译：免疫相关基因的分子表征，从牡蛎鲫鱼中分离的CGBPI / LBP
10. Transcriptome of the eastern oyster Crassostrea virginica in response to bacterial challenge [D] . McDowell, Ian. 2012

机译：东部牡蛎Crassostrea virginica的转录组对细菌攻击的反应
11. Whole Transcriptome Profiling of Successful Immune Response to Vibrio Infections in the Oyster Crassostrea gigas by Digital Gene Expression Analysis [O] . Julien de Lorgeril, Reda Zenagui, Rafael D. Rosa, 2008

机译：通过数字基因表达分析对牡蛎牡蛎弧菌感染成功免疫反应的整个转录组分析。
12. Whole transcriptome profiling of successful immune response to Vibrio infections in the oyster Crassostrea gigas by digital gene expression analysis. [O] . Julien de Lorgeril, Reda Zenagui, Rafael D Rosa, 2011

机译：通过数字基因表达分析对牡蛎Crassostrea gigas中弧菌感染的成功免疫应答的全转录组分析。
13. Interaction of Temperature, Salinity, and Chlorine-Produced Oxidant (CPO) Exposures in Reducing Mortalities from the Estuarine Fungal (Now Protistan) Parasite (Labyrinthomyxa Marina, Formerly Dermocystidium Marinum, Now Perkinus Marinus) Infecting the Eastern or American Oyster, Crassostrea Virginica (Gmelin): Application for Oyster Aquaculture in South Carolina Coastal Impoundments [R] . Scott, G. I. , Sammons, T. I. , Hagan, J. M. 1983

机译：温度，盐度和氯产生的氧化剂（CpO）暴露降低来自河口真菌（现在的protistan）寄生虫（Labyrinthomyxa marina，以前的Dermocystidium marinum，现为perkinus marinus）的相互作用，感染东方或美洲牡蛎，Crassostrea Virginica（Gmelin））：申请在南卡罗来纳州沿海蓄水的牡蛎水产养殖

First de novo transcriptome assembly of Iwagaki oyster, Crassostrea nippona, and comparative evolutionary analysis of salinity-stress response genes in Crassostrea oysters

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