Comparison of automated crystallographicmodel-building pipelines

Emad Alharbi; Paul S. Bond; Radu CalinescuKevin Cowtan

首页> 外文期刊>Acta crystallographica. Section D, Structural biology. >Comparison of automated crystallographicmodel-building pipelines

【24h】

Comparison of automated crystallographicmodel-building pipelines

机译：比较的自动化crystallographicmodel-building管道

获取原文

获取原文并翻译 | 示例

掌桥外文数据库（机构版） >>

开具论文收录证明 >>

文献代查 >>

页面导航

摘要
著录项
相似文献
相关主题

摘要

A comparison of four protein model-building pipelines (ARP/wARP,Buccaneer, PHENIX AutoBuild and SHELXE) was performed using data setsfrom 202 experimentally phased cases, both with the data as observed andtruncated to simulate lower resolutions. All pipelines were run using defaultparameters. Additionally, an ARP/wARP run was completed using models fromBuccaneer. All pipelines achieved nearly complete protein structures and lowR_(work)/R_(free) at resolutions between 1.2 and 1.9 A, with PHENIX AutoBuild andARP/wARP producing slightly lower R factors. At lower resolutions, Buccaneerleads to significantly more complete models.

机译：比较四种蛋白质模型管道(ARP /扭曲、海盗、凤凰自动构建并使用数据setsfrom 202 SHELXE)执行实验分阶段的情况下,这两个数据作为观察andtruncated模拟低决议。defaultparameters。使用模型fromBuccaneer完工。管道实现几乎完全蛋白质结构和lowR_(工作)/ R_(免费)分辨率在1.2和1.9之间,凤凰自动构建andARP /经生产R略低的因素。更完整的模型。

著录项

来源
《Acta crystallographica. Section D, Structural biology.》 |2019年第12期|1119-1128|共10页
作者
Emad Alharbi; Paul S. Bond; Radu CalinescuKevin Cowtan;
展开▼
作者单位

Department of Computer Science, University of York, Heslington, York YO10 5GH, England;

展开▼
收录信息
原文格式 PDF
正文语种英语
中图分类
关键词
computer software; pipeline; pipingcomputer programsAutomationR Factors;

机译：计算机软件;管道;pipingcomputerprogramsAutomationR因素;

相似文献

外文文献
中文文献
专利

1. EST Pipeline System: Detailed and Automated EST Data Processing and Mining [J] . Hao Xu, Liang Zhang, Hong Yu, 基因组蛋白质组与生物信息学报（英文版） . 2003,第003期
2. Comparison of a Manual and an Automated Tracking Method for Tibetan Plateau Vortices [J] . Julia CURIO, Yongren CHEN, Reinhard SCHIEMANN, 大气科学进展（英文版） . 2018,第008期
3. Atlas Pipeline Partners will partner with Chevron Pipeline in the purchase of a 20% interest in West Texas LPG Pipeline Limited Partnership from Buckeye Partners for $85 million. [J] . NGWs Gas Market Reconnaissance Group NGW's Gas Market Reconnaissance . 2011,第Apra27期

机译：Atlas Pipeline Partners将与Chevron Pipeline合作，以8500万美元的价格从Buckeye Partners购买西德克萨斯LPG Pipeline Limited Partnership的20％权益。
4. Sunoco Pipeline Files DO Petition for Capacity on Mariner West Pipeline [J] . Denise Ryan Foster Natural Gas Report . 2020,第12a3295期

机译：Sunoco Pipeline文件在Mariner West Pipeline上申请申请
5. Automated and On-Demand Cybersecurity Certification [C] . Stylianos Karagiannis, Marco Manso, Emmanouil Magkos, IEEE International Conference on Cyber Security and Resilience . 2021

机译：Automated and On-Demand Cybersecurity Certification
6. A Comparison between Portuguese and Chinese Adjectives - A Contribution to the Teaching of Portuguese for Chinese Native Speakers =葡漢形容詞對比及其在葡語對漢教學上的意義 [D] . Sun, Ye. 2021

机译：A Comparison between Portuguese and Chinese Adjectives - A Contribution to the Teaching of Portuguese for Chinese Native Speakers =葡汉形容词对比及其在葡语对汉教学上的意义
7. Diagnostic accuracy of MR imaging to identify and characterize focal liver lesions: comparison between gadolinium and superparamagnetic iron oxide contrast media [O] . Simone Maurea, Pier Paolo Mainenti, Annamaria Tambasco, 2014

机译：MR成像诊断和表征肝脏局灶性病变的诊断准确性：comparison和超顺磁性氧化铁对比剂之间的比较
8. MODERATED EPOSTERS1385Longitudinal strain assessment in dilated cardiomyopathy patients using a novel accelerated DENSE sequence1407Simultaneous T1 and T2 cardiac quantification with CABIRIA: initial clinical experience1423Head-to-head comparison of acceleration algorithms in 4-dimensional flow CMR1502Left ventricular function and size evaluated by hybrid cardiac positron emission tomography-magnetic resonance: Intraindividual comparison of left ventricular ejection fraction and ventricular volumes derived by two modalities1510Left Atrium assessed by Cardiovascular Magnetic Resonance at 1.5 and 3 Tesla – age and gender effects1514Comparison of Free Breathing Cardiac MRI Radial technique to the Standard Multi breath-hold cine SSFP CMR technique for the assessment of LV Volumes and Function1536Self-navigated free-breathing isotropic 3D whole heart phase sensitive inversion recovery magnetic resonance without navigator for detection of myocardial infarction1547Assessment of Right Ventricular Strain Using Myocardial Deformation Recovery Semi Automated Technique: Initial Experience and Normal Values1586Tissue tracking myocardial deformation analysis and prediction of left ventricular remodeling in acute myocardial infarction1589Investigating strategies for optimal 31P MRS clinical cardiac at 3T: Initial Results1620Quantitative Criteria for the Diagnosis of the Congenital Absence of Pericardium by Cardiac Magnetic Resonance1632Widespread tissue injury during acute myocardial infarction: evidence from advanced CMR relaxometry1322Computed tomography coronary angiography verSus sTRess cArdiac magneTic rEsonance for the manaGement of sYmptomatic revascularized patients: a cost effectiveness study (STRATEGY study)1339Comparison of low- versus high-dose of gadobutrol for late gadolinium enhancement imaging at 1.5 Tesla: a clinical feasibility study1347Multi-parametric Cardiac Magnetic Resonance for Prediction of Cardiac Complications in Thalassemia Intermedia: a Prospective Multicenter Study1461Prognostic value of Cardiovascular Magnetic Resonance derived indexes of myocardial fibrosis in heart transplant recipients1523The role of CMR in the acute phase of hospitalization: changing paradigms1542Preoperative CMR-based score predict ventricular response after surgical left ventricular reconstruction in ischemic heart failure patients1555Excellent response rate to cardiac resynchronization therapy guided with magnetic resonance imaging1626The ECG as a predictor of arrhythmogenic substrate on Cardiac Magnetic Resonance Imaging in patients undergoing ablation for premature ventricular contractions1649Comparison of T1-mapping at 3.0T CMR and angiographic APPROACH score for area at risk assessment in ST-segment elevation myocardial infarction1340Pathological correlates of left bundle branch disease in patients with non-ischemic cardiomyopathy: a cardiovascular magnetic resonance study1342Myocardial remodelling and fibrosis in nonischaemic dilated cardiomyopathy: insights from cardiovascular magnetic resonance1411The association between fibrosis and contractile dysfunction in hypertrophic cardiomyopathy assessed by cardiovascular magnetic resonance1622Persistent myocardial inflammation due to intramyocardial haemorrhage in reperfused STEMI as a precursor to adverse LV remodelling - insights from multi-parametric mapping1566Semiquantitative analysis of low and high b value DWI for detecting myocardial edema in acute myocarditis1567Value of Cardiac MRI In Detecting Coronary Artery Disease In Newly Diagnosed Systolic Dysfunction1570Usefulness of cardiac magnetic resonance in tuberous sclerosis complex1578Papillary muscles offer further insight into hypertrophied hearts: a cardiovascular magnetic resonance study1627Diagnostic and clinical implications of CMR timing (early versus late) in patients with troponin positive acute coronary syndromes and unobstructed coronary arteries: Table 1. [O] . Upasana Tayal, Alexandros Kallifatidis, P. Garg, 2016

机译：在使用新的扩张型心肌病的患者缓和EPOSTERS1385Longitudinal应变评估加速DENSE sequence1407Simultaneous T1和T2与CABIRIA心脏定量：在4维流动的加速算法初始临床experience1423Head对头比较CMR1502Left心室功能和尺寸由混合心脏正电子发射断层摄影术评价 - 磁性共振：由两个modalities1510Left庭派生左室射血分数和心室体积的个体间的比较，在1.5和3特斯拉评估心血管磁共振 - 免费的年龄和性别effects1514Comparison呼吸心脏MRI径向技术标准的多屏气电影SSFP CMR技术的LV卷和Function1536Self-导航自由呼吸各向同性3D整个心脏相位敏感反转恢复磁共振导航仪没有检测右Ventricu心肌infarction1547Assessment的评估拉尔菌株使用心肌变形恢复半自动技术：初步经验和正常Values1586Tissue跟踪心肌变形分析和预测左室重构急性心肌infarction1589Investigating策略优化31P MRS临床心脏在3T：初始Results1620Quantitative标准的先天缺失的诊断心包心脏磁Resonance1632Widespread组织损伤急性心肌梗死时：证据先进CMR relaxometry1322Computed CT冠状动脉成像与压力心脏磁共振对症的管理吻合血管患者：成本效益研究（战略研究）1339Comparison低与高剂量钆布醇在1.5特斯拉晚钆增强成像的临床可行性，在中间型地贫心脏并发症的预测study1347Multi参数心脏核磁共振的前瞻性德穆尔心血管磁共振的ticenter Study1461Prognostic价值衍生心肌纤维化指标在住院的急性期CMR的心脏移植recipients1523The作用：改变基于CMR-paradigms1542Preoperative比分预测缺血性心脏衰竭patients1555Excellent响应速度外科左心室重建心脏再同步化后心室反应治疗与磁共振imaging1626The ECG导引作为心脏磁共振成像致心律失常性基板的在ST段抬高心肌infarction1340Pathological在风险评估经历在3.0T CMR T1映射的室性早搏contractions1649Comparison和血管造影APPROACH分数区域消融患者的预测左束支传导疾病的患者与非缺血性心肌病相关因素：心血管磁共振study1342Myocardial重塑和纤维化nonischaemic扩张型心肌病：在从在由心血管磁性resonance1622Persistent心肌炎症评估肥厚型心肌病的纤维化和收缩功能障碍之间心血管磁性resonance1411The协会由于心肌内出血景点在再灌注STEMI为先导，以不利的LV重塑 - 从低的多参数mapping1566Semiquantitative分析和高的b值DWI的见解为在心脏MRI检测冠状动脉疾病急性myocarditis1567Value在结节性硬化症complex1578Papillary肌肉初诊收缩期Dysfunction1570Usefulness心脏磁共振检测心肌水肿提供进一步的深入了解肥大心脏：心血管磁共振study1627Diagnostic和CMR定时的临床意义（早期与晚）患者肌钙蛋白阳性的急性冠脉综合征和通畅的冠状动脉：表1。
9. Comparison of Air Defense Warfare Task Performance with and without an Automated Task Manager Using a GOMS Modeling Tool [R] . Santoro, T. , Kieras, D. 2005

机译：Comparison of air Defense Warfare Task performance with and without an automated Task manager Using a GOms modeling Tool

Comparison of automated crystallographicmodel-building pipelines

摘要

著录项

相似文献

相关主题

期刊订阅