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Chemical Conversion of 5-Fluoromethyl-and 5-Difluoromethyl-Uracil Bases in Oligonucleotides Using Postsynthetic Modification Strategy

机译:Chemical Conversion of 5-Fluoromethyl-and 5-Difluoromethyl-Uracil Bases in Oligonucleotides Using Postsynthetic Modification Strategy

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摘要

This article describes the postsynthetic modification of oligonucleotides (ONs) containing 2'-deoxy-5-fluoromethyluridine (dU~(CH2F)) and 2'-deoxy-5-difluoromethyluridine (dU~(CHF2)). Reactions of fully protected and controlled pore glass (CPG)-attached ONs containing dU~(CH2F) and dU~(CHF2) in basic solutions result in deprotection of all protecting groups except for the 4,4'-dimethoxytrityl group, cleavage from CPG, and conversion of the fluo-romethyl or difluoromethyl groups to afford the corresponding ONs containing 5-substituted 2'-deoxyuridines. Moreover, the difluoromethyl group can be converted to formyl, oxime, or hydrazone via the postsynthetic conversion of protection- and CPG-free ON containing dU~(CHF2).

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