COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Salek Reza M.; Neumann Steffen; Schober DanielHummel JanBilliau KennyKopka JoachimCorrea ElonReijmers TheoRosato AntonioTenori LeonardoTurano PaolaMarin SilviaDeborde CatherineJacob DanielRolin DominiqueDartigues BenjaminConesa PabloHaug KennethRocca-Serra PhilippeOHagan SteveHao JieVliet Michael vanSysi-Aho MarkoLudwig ChristianBouwman JildauCascante MartaEbbels TimothyGriffin Julian L.Moing AnnickNikolski MachaOresic MatejSansone Susanna-AssuntaViant Mark R.Goodacre RoystonGuenther Ulrich L.Hankemeier ThomasLuchinat ClaudioWalther DirkSteinbeck Christoph

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COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

机译：COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

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Metabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental information between research groups, as well as potentially to publishers and funders. After the initial efforts of the metabolomics standards initiative, minimum reporting standards were proposed which included the concepts for metabolomics databases. Built by the community, standards and infrastructure for metabolomics are still needed to allow storage, exchange, comparison and re-utilization of metabolomics data. The Framework Programme 7 EU Initiative 'coordination of standards in metabolomics' (COSMOS) is developing a robust data infrastructure and exchange standards for metabolomics data and metadata. This is to support workflows for a broad range of metabolomics applications within the European metabolomics community and the wider metabolomics and biomedical communities' participation. Here we announce our concepts and efforts asking for re-engagement of the metabolomics community, academics and industry, journal publishers, software and hardware vendors, as well as those interested in standardisation worldwide (addressing missing metabolomics ontologies, complex-metadata capturing and XML based open source data exchange format), to join and work towards updating and implementing metabolomics standards.

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《Metabolomics: Official journal of the Metabolomic Society》 |2015年第6期|1587-1597|共11页
作者
Salek Reza M.; Neumann Steffen; Schober DanielHummel JanBilliau KennyKopka JoachimCorrea ElonReijmers TheoRosato AntonioTenori LeonardoTurano PaolaMarin SilviaDeborde CatherineJacob DanielRolin DominiqueDartigues BenjaminConesa PabloHaug KennethRocca-Serra PhilippeOHagan SteveHao JieVliet Michael vanSysi-Aho MarkoLudwig ChristianBouwman JildauCascante MartaEbbels TimothyGriffin Julian L.Moing AnnickNikolski MachaOresic MatejSansone Susanna-AssuntaViant Mark R.Goodacre RoystonGuenther Ulrich L.Hankemeier ThomasLuchinat ClaudioWalther DirkSteinbeck Christoph;
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Univ Bordeaux, CBiB LaBRI, F-33000 Bordeaux, France;

Univ Oxford e Res Ctr, Oxford OX1 3QG, England;

Univ Birmingham, Sch Biosci, Birmingham B15 2TT, W Midlands, EnglandUniv Manchester, Sch Chem, Manchester M1 7DN, Lancs, EnglandUniv Birmingham, Sch Canc Sci, Birmingham B15 2TT, W Midlands, EnglandLeiden Univ, Leiden Acad Ctr Drug Res, Div Analyt Biosci, Leiden, NetherlandsUniv Florence, Magnet Resonance Ctr CERM, I-50019 Sesto Fiorentino, FI, ItalyMax Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyEuropean Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge CB10 1SD, EnglandLeibniz Inst Plant Biochem, Dept Stress & Dev Biol, D-06120 Halle, GermanyUniv Barcelona, Fac Biol, Dept Biochem & Mol Biol, IBUB, E-08028 Barcelona, SpainUniv Bordeaux, Ctr INRA Bordeaux, Metabolome Facil Bordeaux MetaboHUB,IBVM, INRA,Fruit Biol &Univ Bordeaux, Ctr Bioinformat Bordeaux CBiB, F-33000 Bordeaux, FranceUniv London Imperial Coll Sci Technol & Med, Computat & Syst Med, Dept Surg & Canc, London SW7 2AZZora Biosci OY, Espoo 02150, FinlandTNO, Microbiol & Syst Biol, NL-3700 AJ Zeist, NetherlandsMRC, Human Nutr Res, Cambridge CB1 9NL, England;

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正文语种英语
中图分类生理学;
关键词
Metabolomics; Metabonomics; Data standards; Data exchange; e-Infrastructure; Coordination and data sharing community;

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

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