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首页> 美国政府科技报告 >Stochastic Simulation of Biomolecular Reaction Networks Using the Biomolecular Network Simulator Software; Final rept. 1 Oct 2002-28 Feb 2008
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Stochastic Simulation of Biomolecular Reaction Networks Using the Biomolecular Network Simulator Software; Final rept. 1 Oct 2002-28 Feb 2008

机译：利用生物分子网络模拟器软件对生物分子反应网络进行随机模拟;最终的评论。 2002年10月1日至2008年2月28日

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We developed a software package, the Biomolecular Network Simulator (BNS), to simulate the stochastic behavior of complex biomolecular reaction networks on single and multi-processor computing systems. The software uses either exact or approximate stochastic simulation algorithms for generating Monte Carlo trajectories that describe the time evolution of the behavior of biomolecular reaction networks. This software uses a combination of MATLAB and C-coded functions and can be run on either single processor desk top computers or on multi-processor high performance computing hardware. In the later case, the code is parallelized with the MPI library to allow for multiple simultaneous simulations. The software can be run either in an interactive or in a batch job mode. The graphical user interface of BNS allows users to easily set model and simulation parameters for single or multiple simulation sessions. Furthermore, BNS contains a comprehensive set of data processing tools for post- simulation analysis of the results. The behavior of a single gene in vitro transcription-translation reaction network is investigated as an application example.

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