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Advances in Phylogeny Reconstruction from Gene Order and Content Data

机译：基因序列和内容数据的系统发育重建研究进展

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Genomes can be viewed in terms of their gene content and the order in which the genes appear along each chromosome. Evolutionary events that affect the gene order or content are 'rare genomic events' (rarer than events that affect the composition of the nucleotide sequences) and have been advocated by systematists for inferring deep evolutionary histories. This chapter surveys recent developments in the reconstruction of phylogenies from gene order and content, focusing on their performance under various stochastic models of evolution. Because such methods are currently quite restricted in the type of data they can analyze, we also present current research aimed at handling the full range of whole-genome data.

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作者
Moret, B. M.; Warnow, T.;
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年度 2004
页码 p.1-27
总页数 27
原文格式 PDF
正文语种 eng
中图分类工业技术;
关键词
Nucleotides; Genes; Genome; Evolution(General); Chromosomes; Stochastic processes; Mathematical models; Sequences;

机译：核苷酸;基因;基因组;进化（一般）;染色体;随机过程;数学模型;序列;

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1. Phylogeny and Taxonomy of Casebearer Moths (Lepidoptera, Coleophoridae) Based on Morphological and Molecular Genetic Data. 1. Reconstruction of Phylogeny of Coleophoridae Using Analysis of COI Gene Variability [J] . V. V. Anikin, A. G. Dyomin, M. A. Knushevitskaya Entomological Review . 2016,第1期

机译：基于形态和分子遗传数据的带壳飞蛾（鳞翅目，鞘翅目）的系统发育和分类学。 1.利用COI基因变异性分析对大隐科的系统发育
2. PHYLOGENY AND TAXONOMY OF CASEBEARER MOTHS (LEPIDOPTERA, COLEOPHORIDAE) BASED ON MORPHOLOGICAL AND MOLECULAR GENETIC DATA. 1. RECONSTRUCTION OF PHYLOGENY OF COLEOPHORIDAE (LEPIDOPTERA) USING ANALYSIS OF COI GENE (MTDNA) VARIABILITY [J] . Anikin V. V., Demin A. G., Knushevitskaya M. A. Зоологический журнал . 2016,第1期

机译：基于形态和分子遗传数据的小飞蛾（鳞翅目，鞘翅目）的植物学和分类学。 1.利用COI基因（MTDNA）变异性分析来重建虎胆科的植物学
3. PHYLOGENY AND TAXONOMY OF CASEBEARER MOTHS (LEPIDOPTERA, COLEOPHORIDAE) BASED ON MORPHOLOGICAL AND MOLECULAR GENETIC DATA. 1. RECONSTRUCTION OF PHYLOGENY OF COLEOPHORIDAE (LEPIDOPTERA) USING ANALYSIS OF COI GENE (MTDNA) VARIABILITY [J] . Anikin V. V., Demin A. G., Knushevitskaya M. A. Зоологический журнал . 2016,第1期

机译：基于形态学和分子遗传资料的案例串蛾（Lepidoptera，Coleophoridae）的系统发育和分类。 1.使用COI基因分析（MTDNA）变异性研究植物学生（鳞翅目）的重建
4. Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data [C] . Bernard M.E. Moret, Adam C. Siepel, Jijun Tang, Algorithms in Bioinformatics . 2002

机译：从基因顺序数据的系统发育重建中，反演中值胜过断点中值
5. Phylogeny and Ancestral Genome Reconstruction from Gene Order using Maximum Likelihood and Binary Encoding. [D] . Hu, Fei. 2013

机译：使用最大似然和二进制编码从基因顺序重建系统发育和祖先基因组。
6. An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data [O] . Huan Fan, Anthony R. Ives, Yann Surget-Groba, 2015

机译：下一代测序数据的系统组装重建无组装和比对方法
7. Advances in phylogeny reconstruction from gene order and content data [O] . Bernard M. E. Moret, Tandy Warnow 2005

机译：基因顺序和含量数据在系统发育重建中的进展

Advances in Phylogeny Reconstruction from Gene Order and Content Data

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