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methods of defining a nucleic acid construct, generating a host cell, and defining a plurality of nucleic acid constructs, apparatus, and computer readable storage media

机译:定义核酸构建体,产生宿主细胞并定义多个核酸构建体的方法,装置和计算机可读存储介质

摘要

Systems and methods are provided for defining a nucleic acid construct for integration at locus L of an organism. Nucleic acid requests are received, each such request specifying a genetic change to L. The request are expanded into component polynucleotides which are then arranged into {AR1, . . . , ARm} different arrangements, each ARi in {AR1, . . . , ARm} defining a different arrangement of the component polynucleotides. A score Si for each ARi in {AR1, . . . , ARm} is determined based on whether source constructs encoding a portion ofARi are physically present. An ARf in {AR1, . . . , ARm} is selected based on the score for ARf. Primer pairs are calculated to amplify the portions of ARf not represented in the source constructs. The portions of ARf amplified by the primer pairs and the portions of ARf in the source constructs, ordered by ARf, define the nucleic acid construct.
机译:提供了用于定义核酸构建体以整合在生物体L位点的系统和方法。接收到核酸请求,每个这样的请求指定了L的遗传变化。该请求被扩展为组成多核苷酸的成分,然后将其排列成{AR1,...。 。 。 {AR1,...,ARm}中的每个排列。 。 。 ,ARm}定义了组分多核苷酸的不同排列。 {AR1,...中的每个ARi的得分Si。 。 。 ,ARm}是基于是否物理上存在编码ARi的一部分的源构造来确定的。 {AR1,。 。 。 ,则根据ARf的分数选择。计算引物对以扩增未在源构建体中代表的ARf部分。由引物对扩增的ARf的部分和由ARf排序的源构建体中的ARf的部分定义了核酸构建体。

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