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SPLIT, BREAK, SUBSTITUTE, AND FRAGMENT-SPLICE OPERATIONS FOR COMPUTER MODELS OF ENZYME CASCADES, METABOLIC SIGNAL TRANSDUCTION, SIGNALING PATHWAYS, CATALYTIC CHEMICAL REACTION NETWORKS, AND IMMUNOLOGY
SPLIT, BREAK, SUBSTITUTE, AND FRAGMENT-SPLICE OPERATIONS FOR COMPUTER MODELS OF ENZYME CASCADES, METABOLIC SIGNAL TRANSDUCTION, SIGNALING PATHWAYS, CATALYTIC CHEMICAL REACTION NETWORKS, AND IMMUNOLOGY
Computer utilities for adapting data and properties of computer modeled biochemical pathways for use in a modified form. Utilities can be provided for split, break, substitute, and fragment-splice operations are presented for computer models of enzyme cascades, metabolic signal transduction, signaling pathways, catalytic chemical reaction networks, and immunology. Substitution operations can be used in situations where a specific portion of a modeled biochemical pathway is identified and replaced with an alternate topologically-compatible portion of a modeled biochemical pathway. Split/break operations can be used to break a modeled biochemical pathway into two or more fragments. Splice operations can be used to splice fragments obtained from previous editing operations. These and other operations can be used to introduce a new node or pathway hop in a step in a modeled biochemical pathway. The invention provides for resultant modeled biochemical pathway to comprise added feedback, feedforward, allosteric and/or non-allosteric modulation attributes and components.
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