首页> 外文会议>Asia-Pacific Bioinformatics Conference(APBC 2003); 200302; Adelaide(AU) >A Platform for the Description, Distribution and Analysis of Genetic Polymorphism Data
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A Platform for the Description, Distribution and Analysis of Genetic Polymorphism Data

机译:遗传多态性数据的描述,分布和分析平台

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In this paper we suggest the requirements for an open platform designed for the description, distribution and analysis of genetic polymorphism data. This platform is discussed in terms of our implementation of a phenotypic prediction pipeline with general application to the understanding of genetic variation. The current state of polymorphism data storage and distribution has several recognised deficiencies. These include the lack of a shared data model and low overlap between databases. To move towards overcoming these limitations we propose a universal data model for polymorphism data called biological variation markup language (BVML). We suggest an aggregation system for pooling resource description framework (RDF) descriptions of polymorphism databases to form distributed federated database indexes, which will facilitate the collaborative involvement of numerous laboratories. An ad hoc query interface for data mining using the extensible markup language (XML) messaging standard simple object access protocol (SOAP) is proposed. To address security issues associated with the storage and exchange of genetic variation data use of public key cryptography is considered. Software tools to manipulate and visualise BVML are also discussed.
机译:在本文中,我们提出了一个开放平台的要求,该开放平台旨在描述,分布和分析遗传多态性数据。我们将根据我们对表型预测管道的实现方法来讨论该平台,并将其普遍应用于理解遗传变异。多态数据存储和分发的当前状态有几个公认的缺陷。其中包括缺乏共享数据模型以及数据库之间的重叠少。为了克服这些限制,我们为多态性数据提出了一种通用数据模型,称为生物变异标记语言(BVML)。我们建议使用一个聚合系统来汇集多态数据库的资源描述框架(RDF)描述,以形成分布式联合数据库索引,这将有利于众多实验室的协作参与。提出了一种使用可扩展标记语言(XML)消息传递标准简单对象访问协议(SOAP)进行数据挖掘的临时查询接口。为了解决与遗传变异数据的存储和交换相关的安全性问题,考虑使用公钥密码术。还讨论了操作和可视化BVML的软件工具。

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